Abstract
This page is an evidence bank that takes prior research collected by breaking one large question into 50 investigative tasks and reassigns that material to unresolved-question buckets (U0-U15). Rather than acting as a proposal list, it uses URL-backed citations to separate what has some accumulated support from what remains unresolved.
Where a quick read can stop
- If you only want the overview: read the collection-and-screening statistics and the U-by-U current-status map.
- If you want a specific issue: jump straight to the U number that matches your concern and follow the cited literature from there.
- What this page does not do: it does not guarantee that a theory is correct merely by listing references for it.
Start with the statistics and quality gate so you can see how contamination was prevented. Then use the U-by-U current-status map to locate the center of the unresolved space. Only after that is it worth reading the individual citations closely.
This page is not meant to be read as a pile of papers. It is a map organized by unresolved problems. If you want a primer on how it differs from the archive page, and on what should still be treated as unresolved, start with the Wiki: How to Read Literature and Evidence Pages.
If you want a straight path from a paper found here to either a proposal, an issue, or preparation work for the external-dependency/collaboration track, use the Wiki: Literature to Action Route.
If you want a one-page workflow that connects literature triage, theory notes, proposals, execution tasks, and external dependencies, use the Wiki: Reading to Change Workflow.
This public literature map stays at the routing level. If you want the current one-question-at-a-time route from an unresolved question to an EEG-feasible test, a fundable theme, and a fixed dataset anchor, start with the RQ solvability bridge, then go to the current public six-RQ brief, the RQ60 EEG feasibility page, the RQ-by-RQ deep dossiers, the grant and dataset playbook, and the current funding shortlist.
The active route is no longer broad thematic summarization. We now deepen one unresolved question at a time, fix one bounded claim, one dataset anchor, and one stopping rule, and keep stronger or externally dependent claims outside the EEG result. If you want the current deepening queue rather than the literature map, use the current public six-RQ brief, the RQ-by-RQ deep dossiers, and the RQ60 EEG feasibility page.
The U-by-U summaries and representative references on this page are useful entry points, but whenever a claim is used as evidence you still need to go back to the DOI or original paper. For a one-page guide to choosing between summaries, source texts, and issue history, see the Wiki: Summary vs. Source Reading.
This page mixes publication venue, literature type, site-internal status labels, and evidence classes closely enough that they can blur together. If you want a clean explanation of what each label means and what it still does not guarantee, see the Wiki: Source Types, Status Labels, and Evidence Classes.
The U numbers are not advanced theory names. They are just labels for unresolved-problem groups. If you want to understand each U in ordinary language first, start with the Wiki: U-Number Guide.
The "current status" labels on this page are not pass/fail outcomes. They are short labels for the kind of gap that remains. The Wiki: Reading Partial Progress, Exploratory Stages, and Gaps helps you read those gaps more calmly.
March 2026 priority route for technical and natural-science readers
The weakness of this page used to be that the intake log and the experimental frontier sat too close together, making it easy for technical readers to miss where the strongest primary evidence currently sits. The default reading order is now fixed as measurement and human observability, sequential bridge validity, model-conditioned causal inference, direct validation and imitation-separation, long-horizon closed-loop stability, maintenance-state beyond the connectome, and physical grounding. That order reflects the current density of primary evidence represented by Tang et al. (2023), d'Ascoli et al. (2025), Willett et al. (2023), Littlejohn et al. (2025), Wairagkar et al. (2025), Unnwongse et al. (2023), Hao et al. (2025), Lu et al. (2023), Bosch et al. (2022), MICrONS Consortium et al. (2025), Egger et al. (2024), Penny et al. (2004), Rosa et al. (2012), Jafarian et al. (2020), Frässle et al. (2021), Jafarian et al. (2024), Wu et al. (2024), Shapson-Coe et al. (2024), Johansen et al. (2024), Lucchetti et al. (2025), Li et al. (2025), Baadsvik et al. (2024), Rzechorzek et al. (2022), Hirschler et al. (2025), Dagum et al. (2026), Hadzibegovic et al. (2025), Alfonsa et al. (2025), Terceros et al. (2026), Vishwanath et al. (2026), Kim et al. (2025), Dewa et al. (2025), Bukalo et al. (2026), Lynn et al. (2021), de la Fuente et al. (2023), Nartallo-Kaluarachchi et al. (2025), Ishihara & Shimazaki (2025), and Epp et al. (2025).
This evidence bank uses the core site's issue-year citation rule for the technical frontier, but raw year adjacency is not treated as one ladder. The reason is concrete. Nature lists Terceros et al. as Published: 26 November 2025 while the citation line is Nature volume 649, pages 1254-1263 (2026). Dewa et al. is Published: 15 October 2025 with issue date 04 December 2025. Hirschler et al. is Published: 14 October 2025, Dagum et al. is Published: 27 January 2026, and Bukalo et al. is Published: 11 February 2026. Therefore, U3 controller-side causality and U1/U7 bounded human observability must be named before year order is allowed to shape a frontier judgment.
| Priority route | U to read first | What to verify first | What still must not be claimed |
|---|---|---|---|
| 1. Measurement and human observability | U1 / U7 | Field-formation visibility, inverse-problem uncertainty, time synchronization, whether a wearable OPM-MEG paper is only a shielding- / field-nulling- / calibration- / anatomy- / crosstalk-conditioned movement-tolerance route, whether a paper advances a destructive local scaffold, a tractography-derived macro pathway prior, a living-human proxy layer, or only metadata / standards, whether the human route is still specialized or model-heavy, whether a tractography claim depends on endpoint access, bundle priors, graph construction, or calibration, and for multimodal papers whether the advance is only synchronized acquisition, a shared-vs-specific component, a quantity bridge, or a bundle that survives complete-case / cross-centre disagreement audits. | Reading an increase in observables, a tractography graph, a new human proxy, or a simultaneous multimodal factor as if it already implied state-complete reconstruction or one solved biological state variable. |
| 2. Sequential bridge validity | U7 / U8 | Acquisition order, live-to-fix or cross-day delay, regime continuity, deformation / coordinate transfer, bridge-validation rung, and what object was actually carried across the bridge before same-subject or same-brain language is promoted. | Reading specimen identity, landmark-based correlative workflow, or repeated-live reacquisition as if they already sampled one latent state. |
| 3. Model-conditioned causal inference | U4 | Candidate model space, observation assumptions, family comparison, external validation, reliability window, and abstention boundary for effective-connectivity claims. | Reading a dense or fast DCM graph as discovered causal wiring or as unique internal-state recovery. |
| 4. Direct validation and imitation-separation | U13 | That successful decoding or communication does not, by itself, imply causal preservation under intervention or whole-brain emulation. | Calling brain-to-text or speech neuroprosthesis results direct proof of WBE. |
| 5. BCI initialization route | U13 / U8 | Whether the paper improved rapid same-subject calibration or transfer-assisted initialization, and whether that route is being overread as durable everyday use. | Calling shorter warm-up or better transfer a solved durability or autonomy problem. |
| 6. Long-horizon closed-loop stability | U8 | Whether fixed-decoder interval, instability metrics, latency, jitter, dropout, recalibration burden, recovery time, and slow internal-milieu disclosure are tracked as separate metrics. | Claiming week-to-month deployability or boundary-complete embodiment on the basis of within-session success, fast timing, or short-horizon decoder survival alone. |
| 7. maintenance-state family split | U3 | Whether intrinsic-excitability allocation, AIS / channel-state plasticity, homeostatic set-point / recovery control, human local clinical-unit allocation, sleep-dependent homeostasis / plasticity proxy, sleep replay / replay-coupling route family, state-gated perturbation proxy, transcriptional stabilization, post-transcriptional RNA control, phospho-signaling, local proteostasis / tag-capture balance, cargo-routing state, ECM / PNN gate state, ionic / chloride regulation, bioenergetic / mitochondrial support, neurovascular-unit / BBB / pericyte support, clearance / immune support, neuromodulatory class split, shared extracellular / electrical-state split, astrocyte multiday trace, myelin / oligodendrocyte timing support, glial substrate-routing, and active maintenance have been dropped from the picture. | Assuming that connectome plus cell type is already enough to close the long-run dynamical problem. |
| 8. Physical grounding | U10 | Whether signal route, state definition, coarse-graining / timescale, estimator family, observed-state closure / memory order, reverse-transition support / finite-data handling, stability / nuisance sensitivity, and physiology-side grounding are disclosed before dissipation, energy constraints, or effective cost are interpreted. | Acting as if one irreversibility result already gives direct dissipation, a common thermodynamic scale, or a WBE gate. |
One remaining compression at the literature front door was that connectome could still refer to a living-human diffusion-MRI tractography graph without naming which part of the pipeline created the claim. The primary literature does not support reading that object as one stable graph. Thomas et al. (2014) showed that tractography accuracy is inherently limited when only voxel-averaged local orientation estimates are available, Schilling et al. (2018) showed persistent gyral-endpoint bias across algorithms and diffusion models, and Schilling et al. (2020) showed that high anatomical accuracy appears mainly when strong start / end / exclusion priors are supplied, which is a targeted bundle-hypothesis route rather than generic edge-complete recovery. Downstream graph meaning is unstable too: Gajwani et al. (2023) showed across 1,760 group connectomes built from 40 pipelines and 44 group-reconstruction schemes that hub location depends strongly on processing choices, while McMaster et al. (2025) and Bramati et al. (2026) show that voxel-size harmonization and diffusion-sampling scheme still move tractography outputs. Even newer gains such as Zhu et al. (2025) improve reconstruction through hybrid MRI-microscopy calibration, not by turning living-human tractography into a finished connectome. Therefore, the safe U1/U7 reading is acquisition-, endpoint-, graph-construction-, and calibration-conditioned macro pathway prior or, at best, targeted bundle-hypothesis route, not synapse-resolved structural truth or a WBE-relevant wiring completion claim. For the operating rule, go next to Wiki: tractography route card and Verification: Observability Budget.
One remaining compression at the literature front door was inside the same-brain lane itself. The primary literature does not support reading same-brain functional connectomics as one solved class. Bosch et al. (2022) showed that live physiology to EM correlation is a multistage landmark-based bridge, MICrONS Consortium et al. (2025) showed that same-brain structure-function linkage remains a sequential local pipeline, Ding et al. (2025) added a validated stimulus-conditioned response model, and Gamlin et al. (2025) still transferred transcriptomic identity through morphology-based prediction. At the remaining latent-state level, Molnár et al. (2016), Sakamoto et al. (2018), Holler et al. (2021), Dürst et al. (2022), Emperador-Melero et al. (2024), and Mittermaier et al. (2024) show that current synaptic efficacy, release-site number, active-zone nanostructure / priming-site assembly, release probability, and membrane-state-gated consolidation are not closed by structure-function correspondence, while Beiran & Litwin-Kumar (2025) show that connectome-constrained dynamics can remain degenerate until extra recordings narrow the solution space. Therefore, the safe U7/U8 reading is sequential scaffold plus task-bounded conditional prediction, not direct transcriptomic truth, presynaptic release-machinery truth, current synaptic-state readout, or one solved local twin.
The literature front door still had one missing U3 split in the matrix lane. The primary literature does not support reading ECM / PNN evidence as one generic support variable. Pizzorusso et al. (2002) showed a plasticity-window reopening route, Frischknecht et al. (2009) showed a receptor-mobility / short-term-plasticity constraint route, Nguyen et al. (2020) showed a microglia-driven ECM-remodeling and remote-memory-precision route, Jabłońska et al. (2024) showed a synapse-specific inhibitory-plasticity route, Alexander et al. (2025) showed a CA2-versus-PV memory-support route, Mehak et al. (2025) showed an age-linked rescue route, and Lehner et al. (2024) plus Banovac et al. (2025) remain human ex vivo histology routes. Therefore, the safe U3 reading is route-family evidence about hidden maintenance variables, not a direct living-human whole-brain ECM meter or one solved support-state readout.
The literature front door still had one missing U3 split inside the molecular-maintenance lane. The primary literature does not support reading phospho-signaling / second-messenger evidence as one common controller. Lee et al. (2003) and Rodrigues et al. (2004) are phosphosite-specific plasticity and learning-linked local phosphorylation routes, Havekes et al. (2016) and Vierra et al. (2023) are compartmentalized second-messenger / signalosome routes, Barone et al. (2023) is a circadian phospho-timing gate, Altas et al. (2024) is a region-specific phosphorylation and synapse-localization route, Rodriguez et al. (2025) is a single-site phospho-mutant causal intervention, and Biswas et al. (2023) is a human ex vivo phosphoproteome atlas route. Therefore, the safe U3 reading is to name the route family first; these papers do not jointly provide a route-free current whole-brain phospho-controller, one universal memory controller, or a living-human in vivo phospho-state readout.
The literature front door still had one remaining compression inside the human clearance lane. The current primary literature does not support reading human clearance-support evidence as one transport row. Fultz et al. (2019) is a macroscopic sleep-state CSF-oscillation route, Kim, Huang, & Liu (2025) is a parenchyma-CSF water-exchange route, Lim et al. (2025) is a respiration-conditioned net-flow route whose direct observable remains plane-specific awake-state CSF displacement, Yoo et al. (2025) is an exercise-conditioned contrast-influx / meningeal-lymphatic route, Eide et al. (2023) is an intrathecal-tracer / CSF-to-blood-clearance-capacity route, Hirschler et al. (2025) is a CSF-mobility MRI route, and Dagum et al. (2026) is a model-based overnight biomarker-efflux route. Therefore, the safe U3 reading is route-family evidence about bounded human transport-side observables, not route-free whole-brain bulk circulation, local immune-controller identity, or one solved human maintenance readout.
The literature front door still had one remaining compression inside the barrier-side human lane. The primary literature does not support reading blood-CSF barrier / choroid-plexus evidence as one reusable route next to BBB and clearance papers. Zhao et al. (2020) and Sun et al. (2024) are choroid-plexus perfusion routes, Petitclerc et al. (2021) is a blood-to-CSF water-transport route, Anderson et al. (2022) is a DCE water-cycling route, Wu et al. (2026) is an apparent BCSFB-exchange route, and Petitclerc et al. (2026) is a simultaneous BBB-versus-BCSFB ASL exchange route. Therefore, the safe U3 / U7 reading is route-family evidence about bounded blood-CSF-barrier observables, not generic BBB permeability, not route-free whole-brain clearance truth, and not direct choroid-plexus epithelial-controller identity.
The literature front door still had one remaining compression inside the timing-support lane. The primary literature does not support reading myelin / oligodendrocyte evidence as one common delay or one common human myelin row. Gibson et al. (2014) and McKenzie et al. (2014) are activity-dependent oligodendrogenesis / learning routes, Seidl et al. (2015) and Cohen et al. (2020) are node / internode / periaxonal timing-control routes, Xin et al. (2024) is a plasticity-brake route, and Della-Flora Nunes et al. (2025) is a recovery-boundary route showing that functional recovery can occur without complete remyelination. On the human side, van Blooijs et al. (2023) constrain a tract-scale transmission-speed route, Arshad et al. (2017) constrain an MWF versus calibrated T1w/T2w comparison route, Hagiwara et al. (2018) constrain a relaxometry / MTsat comparison route, Baadsvik et al. (2024) constrain a bilayer-sensitive mapping route, Genc et al. (2025) constrain a developmental diffusion-microstructure route with ex vivo oligodendrocyte-expression alignment, Chen et al. (2025) show that orientation dependence remains an internal MT-family burden, Galbusera et al. (2025) constrain a qT1 remyelination-sensitive pathology route, and Colaes et al. (2026) show that T1w/FLAIR may remain a general tissue-health marker rather than a myelin-specific readout. Therefore, the safe U3 reading is not myelin support exists; it has to name which mechanistic family or human proxy route is actually carrying the claim.
The U8 route also needed one more stop line. de Quervain et al. (1998) and Oei et al. (2007) showed that glucocorticoid state can impair retrieval and reduce human hippocampal / prefrontal retrieval activity. McCauley et al. (2020), Barone et al. (2023), and Birnie et al. (2023) showed that circadian and corticosteroid timing alter hippocampal plasticity machinery, while Reger et al. (2008) and Sherman et al. (2015) show that insulin signaling and circadian-rhythm consistency can shift human memory or hippocampal activity. Therefore, U8 papers are no longer read here from latency, jitter, decoder survival, or recalibration burden alone. The route now also asks whether slow internal-milieu variables such as circadian phase, glucocorticoid state, and insulin / metabolic regime were controlled, measured, perturbed, or left latent.
The site-wide route-card update already fixed DCM / effective-connectivity claims as model-conditioned causal hypotheses on the core pages, but this literature map still hid that rule inside a broader U4/U13 row. Penny et al. (2004), Rosa et al. (2012), Jafarian et al. (2020), Frässle et al. (2021), Jafarian et al. (2024), and Wu et al. (2024) together show why scaling and reliability do not erase candidate-model and observation-model dependence. Therefore, the technical route here now reads U4 before U13 so model-conditioned causal inference is not compressed into decode / imitation discussion.
The remaining weakness in the literature route was that source validation and inverse-solver comparison still sat too close to the hidden assumption that the target source class had already reached the sensors. The primary literature does not support that shortcut. Ahlfors et al. (2010) showed strong orientation dependence in EEG / MEG sensitivity, Ahlfors et al. (2010) showed that extended or distributed sources can cancel at the surface, Goldenholz et al. (2009) showed that source extent and anatomy materially change cortical SNR, and Piastra et al. (2021) showed that EEG / MEG sensitivity depends on head-model detail including the CSF compartment. Therefore, on this page, U1 / U7 now asks technical readers to separate field-formation visibility, inverse uncertainty, and validation class rather than reading `validated ESI` as a general route to internal-state recovery.
One more U1 / U7 compression still remained. The current primary literature does not support reading wearable OPM-MEG as if movement tolerance automatically removed the EEG / MEG visibility wall. Boto et al. (2018) established wearable feasibility but also exposed saturation risk without background-field control. Rea et al. (2021) and Mellor et al. (2022) show that precision field modeling and nulling remain part of the route, Holmes et al. (2025) show that lightly shielded operation still depends on active compensation plus tSSS, Rhodes et al. (2025) keep individual MRI as the gold standard even when pseudo-MRI is useful, Wu et al. (2025) show that crosstalk remains an array-level design burden, and Spedden et al. (2025) show whole-body stepping feasibility in only three healthy adults under a narrow sensorimotor beta task. Therefore, on this page a wearable OPM-MEG paper is first typed as a movement-tolerant acquisition route conditioned on shielding class, field nulling / interference suppression, calibration / coregistration, anatomy route, crosstalk burden, and task regime. It is not read as shield-free portability or as a separate escape from the EEG / MEG visibility / inverse wall.
The remaining weakness in the literature route was that U7 could still be read as a synchronization bucket only. The current primary literature does not support that shortcut. Kothe et al. (2025) show that LSL can support millisecond-scale synchronized acquisition for most neurobehavioral research, but still cannot infer device-side delay by itself. Vafaii et al. (2024) show that simultaneous Ca2+ and BOLD data contain both common and divergent network structure. Chen et al. (2025) show EEG-PET-MRI can recover coupled global dynamics together with distinct network patterns. Bolt et al. (2025) show that a major global fMRI mode is substantially coupled to autonomic physiology, and Epp et al. (2025) show that roughly 40% of significant task-related BOLD voxels can change opposite to oxygen metabolism. Amiri et al. (2023) further show that acute DoC EEG+fMRI same-sample models relied on a 48-patient subset, whereas Manasova et al. (2026) show that pairwise multimodal disagreements are higher in minimally conscious and improving patients. Therefore, on this page, U7 now asks technical readers to separate synchronization infrastructure, shared-vs-specific component evidence, quantity bridge / physiology grounding, and bundle robustness under missing-modality or cross-centre stress rather than reading multimodal as one monotonic ladder.
For technical reading, the first split is between destructive local structure and living-human in vivo proxy routes. Lu et al. (2023), Shapson-Coe et al. (2024), Dorkenwald et al. (2024), and MICrONS Consortium et al. (2025) belong to the destructive-route class because preservation, registration, throughput, and proofreading burden materially change what the structural result means. By contrast, Johansen et al. (2024), Lucchetti et al. (2025), Ren et al. (2015), Ren et al. (2017), Guo et al. (2024), Kaiser et al. (2026), Karkouri et al. (2026), Li et al. (2025), Baadsvik et al. (2024), Rzechorzek et al. (2022), Padrela et al. (2025), Chung et al. (2025), Zhao et al. (2020), Sun et al. (2024), Petitclerc et al. (2021), Anderson et al. (2022), Wu et al. (2026), Petitclerc et al. (2026), Fultz et al. (2019), Kim, Huang, & Liu (2025), Lim et al. (2025), Yoo et al. (2025), Eide et al. (2023), Hirschler et al. (2025), and Dagum et al. (2026) raise different living-human observability classes and still leave explicit latent-state ceilings. On this page, the in vivo papers are therefore read on three axes at once: what variable class the route constrains, how specialized or deployment-limited the route still is, and what bounded hidden-state family the route can safely calibrate. A regional SV2A atlas calibrates a synaptic-density comparison family, a five-metabolite 1H-MRSI connectome calibrates a macro biochemical scaffold family, resting 31P balance calibrates a macro energetic-balance family, 31P MT calibrates a model-conditioned exchange-flux family, whole-brain 31P NAD mapping calibrates an intracellular NAD-content family, localized 31P fMRS calibrates a task-evoked NAD-dynamics family, deuterium absolute quantification calibrates an absolute metabolite-distribution family, dynamic deuterium MRSI calibrates a kinetic energetic-rate family, tract-scale transmission-speed or macro myelin / oligodendrocyte routes calibrate bounded timing-support proxy families, thermal papers calibrate a separate macro thermal-physiology family, BBB permeability and exchange papers calibrate a macro neurovascular / BBB proxy family, blood-CSF-barrier papers calibrate bounded choroid-plexus perfusion, blood-to-CSF transport, DCE water cycling, and apparent or simultaneous boundary-separated exchange families, and the human clearance papers split further into bounded sleep-state CSF-oscillation, parenchyma-CSF water-exchange, respiration-conditioned net-flow, exercise-conditioned contrast-influx / meningeal-lymphatic-flow, intrathecal-tracer / CSF-to-blood-clearance-capacity, CSF-mobility MRI, and model-based biomarker-efflux calibrators rather than one common clearance meter. Even inside the deuterium family, Ahmadian et al. (2025) show that dose changes downstream metabolite visibility and Bøgh et al. (2024) show that repeatability depends on the acquisition / time-point regime, so the family label still does not fix one route burden. The same no-compression rule now also applies inside the human intrinsic-excitability lane: Tallman et al. (2025) is a local clinical single-unit allocation-related readout, Huber et al. (2013), Kuhn et al. (2016), and Fehér et al. (2026) are sleep-history / plasticity-recalibration proxies, and Zrenner et al. (2018) plus Khatri et al. (2025) are state-gated perturbation proxies. Those human routes do not share one direct observable, and they still do not identify AIS geometry, ion-channel distribution, or the responsible homeostatic controller in vivo. None of those routes closes current post-transcriptional RNA-state, current phospho-signaling / second-messenger state, branch-local proteostasis / tag-capture, branch- or bouton-specific cargo-routing, chloride-set-point state, cell-specific neurovascular-controller state, or other cell-specific maintenance controllers. That is why this page now treats calibrator role as a separate evidence field rather than hiding it inside generic route maturity.
One more compression still remained inside the U7 spectroscopy lane. The primary literature does not support reading 1H-MRSI observability as one row. Lucchetti et al. (2025) built a five-metabolite parcel-similarity graph in living humans, whereas Guo et al. (2025) built a high-resolution metabolite-distribution route under explicit extended-spatiospectral-encoding and subspace-model burden. Those are not the same inferential object. On this page, `1H-MRSI` therefore never means one generic spectroscopy step: the safe reading has to separate macro biochemical similarity from high-resolution metabolite distribution before the route is compared with 31P or deuterium papers.
One more compression still remained inside the U7 human-observability lane. The primary literature does not support reading SV2A / synaptic-density PET as one solved row. Naganawa et al. (2024) constrained a tracer-specific quantification route for 18F-SynVesT-1, Johansen et al. (2024) built a healthy-human atlas, Matuskey et al. (2025) provided a disease contrast in autistic adults, Shatalina et al. (2024) linked [11C]UCB-J to task switching and switch cost in healthy adults, Smart et al. (2021) showed that brief visual activation changes delivery but not binding, and Holmes et al. (2022) found no measurable overall SV2A change 24 h after ketamine despite symptom reduction. Those are different inferential slices. Therefore, on this page, SV2A PET now means only the named slice that the paper actually strengthens, not a direct readout of current synaptic efficacy or momentary synaptic state.
One more ceiling still had to stay explicit across the same-brain and U7 rows. The current primary literature does not support reading same-brain structure-function linkage or regional SV2A density as if they already fixed release-site number, docked-vesicle architecture, active-zone nanostructure / priming-site assembly, or current release competence. Molnár et al. (2016) showed multiple docked vesicles and multi-vesicular release in human synapses, Sakamoto et al. (2018) showed that Munc13-1 assemblies set independent release sites, Dürst et al. (2022) showed that vesicular release probability sets individual synaptic strength, and Emperador-Melero et al. (2024) showed that CaV2 clustering and vesicle priming are mediated by distinct active-zone machineries. Holler et al. (2021) and Mittermaier et al. (2024) strengthen same-brain scaffold and membrane-state gating, not a direct active-zone readout, while Smart et al. (2021) show that brief activation changes delivery without changing [11C]UCB-J binding. Therefore, U7 uses same-brain scaffold and SV2A only as bounded calibrator classes unless a paper directly measures the presynaptic release machinery itself.
| Anchor route | Direct observable | Safe calibrator role | Still not closed |
|---|---|---|---|
| Johansen et al. (2024) | Regional SV2A PET atlas in healthy humans | Healthy baseline for regional synaptic-density proxy comparisons | Current synaptic efficacy, release-site number, active-zone nanostructure / priming-site assembly, branch-local weights, tag state |
| Naganawa et al. (2024) | Tracer-specific noninvasive quantification of 18F-SynVesT-1 against a 1TC reference standard | Quantification-route calibration for an SV2A tracer family | Healthy atlas truth, disease contrast, release-site number, active-zone nanostructure / priming-site assembly, current release competence, task-linked state readout |
| Matuskey et al. (2025) | Case-control cortical [11C]UCB-J disease contrast in autistic adults | Disease-linked regional synaptic-density comparison slice | Universal baseline, momentary synaptic state, release-site number, current release competence, intervention-sensitive restoration truth |
| Shatalina et al. (2024) | [11C]UCB-J association with task-switching activity and switch cost in healthy adults | Task / cognition association slice for selected executive functions | All-task cognition meter, current synaptic efficacy, release-site number, active-zone nanostructure / priming-site assembly, momentary activation truth |
| Smart et al. (2021) | Brief visual activation changes tracer delivery without changing [11C]UCB-J binding | Activation-timescale ceiling for SV2A interpretation | Momentary release competence, release-site number, active-zone nanostructure / priming-site assembly, fast synaptic-efficacy readout |
| Holmes et al. (2022) | No measurable overall SV2A change 24 h after ketamine despite symptom reduction | Intervention-response ceiling for whole-brain SV2A interpretation | Rapid treatment-efficacy meter, release-site number, active-zone nanostructure / priming-site assembly, current release competence |
| Lucchetti et al. (2025) | Within-subject five-metabolite parcel-similarity graph | Macro biochemical scaffold / similarity calibration | Kinetic flux, cell-specific controller state, branch-local metabolism |
| Guo et al. (2025) | High-resolution whole-brain metabolite-distribution maps under extended spatiospectral encoding and subspace modeling | High-resolution metabolite-distribution calibration under an explicit acquisition / reconstruction burden | Parcel-similarity scaffold, kinetic flux, route-free reconstruction robustness, branch-local metabolism |
| Ren et al. (2015) | Resting 31P metabolite concentrations, ATP synthesis, and intra-/extracellular pH | Macro energetic-balance calibration in resting human brain | Exchange flux, localized NAD dynamics, branch-local ATP sufficiency |
| Ren et al. (2017) | 31P magnetization-transfer PCr→ATP and Pi→ATP exchange-flux estimates | Model-conditioned macro exchange-flux calibration | Cell-specific ATP routing, localized controller identity, same-subject maintenance closure |
| Guo et al. (2024) | Whole-brain intracellular NAD-content map at 7 T | Macro 31P NAD-content calibration | Task-locked local NAD dynamics, cell-specific redox control, controller identity |
| Kaiser et al. (2026) | Functionally localized occipital-voxel 31P-fMRS NAD+ dynamics during visual stimulation | Localized task-evoked NAD-dynamics calibration | Whole-brain NAD map, resting energetic balance, branch-local mitochondrial state |
| Karkouri et al. (2026) | Absolute deuterated HDO / Glc / Glx / Lac maps under explicit quantification in a mixed healthy / glioblastoma 7 T workflow | Absolute deuterium metabolite-distribution calibration | Kinetic-rate identifiability without model / input assumptions, route-free dose / timing invariance, branch-local ATP reserve |
| Li et al. (2025) | Dynamic deuterium MRI / MRSI glucose transport and metabolic-rate maps under blood-input and kinetic modeling at a fixed 7 T operating point | Macro energetic-rate calibration under an explicit kinetic model | Branch-local ATP reserve, mitochondrial positioning, phospho state, route-free repeatability / portability |
| Ahmadian et al. (2025) / Bøgh et al. (2024) | Human deuterium-route dose sensitivity at 7 T and acquisition / time-point-conditioned repeatability at 3 T | Operating-point burden calibration for deuterium observability claims | Route-free dose invariance, field-independent repeatability, protocol portability, direct kinetic truth |
| van Blooijs et al. (2023) / Baadsvik et al. (2024) / Genc et al. (2025) / Galbusera et al. (2025) / Colaes et al. (2026) | Tract-scale transmission-speed estimates and quantity-defined macro myelin / oligodendrocyte-linked proxies | Bounded timing-support proxy calibration under named speed, contrast, bilayer, developmental-alignment, remyelination-pathology, or tissue-health-ceiling routes | Per-axon node / internode / periaxonal timing controller, recovery completeness, living-human timing-state ground truth |
| Rzechorzek et al. (2022) | Macro human thermal rhythm / temperature physiology | Bounded macro thermal-physiology calibration | Local operating temperature, device-heating confound, thermal-controller identity |
| Morgan et al. (2024) / Padrela et al. (2025) / Padrela et al. (2026) | Macro BBB water-exchange imaging under named ASL method families and cohort regimes | Bounded BBB water-exchange calibration under route-specific ASL fitting and interpretation | Cell-specific pericyte controller state, local BBB maintenance logic, amyloid-specific BBB truth, and branch-level support control |
| Chung et al. (2025) | Tracer-specific molecular BBB permeability imaging with dynamic PET and kinetic modeling | Bounded tracer-specific BBB transport calibration under named radiotracer and transport-model assumptions | Generic BBB permeability truth, cross-tracer equivalence, and cell-specific endothelial / pericyte controller state |
| Zhao et al. (2020) / Sun et al. (2024) | Human choroid-plexus perfusion imaging under ASL and lifespan cohort analysis | Bounded blood-CSF-barrier perfusion calibration | Blood-to-CSF transport truth, epithelial-transporter identity, and generic BBB equivalence |
| Petitclerc et al. (2021) | Human blood-to-CSF water transport under ultra-long-TE ASL | Bounded blood-CSF transport calibration | Choroid-plexus perfusion truth, DCE water cycling, route-free whole-brain clearance, and generic BBB equivalence |
| Anderson et al. (2022) | Human choroid-plexus water cycling with DCE-derived exchange terms | Bounded choroid-plexus water-cycling calibration | Perfusion equivalence, blood-to-CSF transport equivalence, and direct epithelial-controller identity |
| Wu et al. (2026) / Petitclerc et al. (2026) | Apparent BCSFB exchange and simultaneous BBB-versus-BCSFB exchange separation | Bounded boundary-separated exchange calibration under REXI or multi-TE ASL compartment models | One generic barrier scalar, route-free transport equivalence, and direct choroid-plexus epithelial-controller truth |
| Tallman et al. (2025) | Hippocampal single-unit sparse-code / firing-rate relation during episodic encoding and retrieval in epilepsy patients | Local clinical-unit allocation-related readout for human episodic-memory excitability | Pre-existing intrinsic excitability, AIS / channel state, synaptic-drive contribution, whole-brain controller coverage |
| Huber et al. (2013) / Kuhn et al. (2016) / Fehér et al. (2026) | Wake / sleep / nap dependent shifts in TMS-EEG excitability or PAS-induction plasticity | Bounded sleep-homeostasis / plasticity-recalibration proxy | Cell-specific controller identity, AIS state, synapse-specific mechanism, whole-brain excitability map |
| Zrenner et al. (2018) / Khatri et al. (2025) | EEG-defined or personalized whole-brain state conditioned differences in TMS-induced plasticity or corticospinal responses | Bounded state-gated perturbation proxy for human excitability-dependent response | AIS geometry, ion-channel distribution, allocation state, long-horizon homeostatic controller |
| Fultz et al. (2019) | Macroscopic CSF oscillations during human NREM sleep | Bounded sleep-state CSF-oscillation calibration | Net molecular clearance flux, protein-efflux truth, cell-specific immune controller state |
| Kim, Huang, & Liu (2025) | Parenchyma-CSF water exchange measured with MT spin labeling | Bounded parenchyma-CSF water-exchange calibration | Protein-clearance capacity, local immune controller identity, synapse-resolved maintenance control |
| Lim et al. (2025) | Plane-specific awake-state CSF displacement and net-flow changes linked to respiration and diaphragm motion | Bounded respiration-conditioned net-flow calibration | Route-free whole-brain bulk circulation, protein-clearance capacity, local immune controller identity |
| Yoo et al. (2025) | Intravenous-contrast-derived putative glymphatic influx and parasagittal meningeal-lymphatic flow after long-term exercise | Bounded intervention-conditioned contrast-influx / meningeal-lymphatic calibration | Natural-sleep whole-brain clearance truth, route-free local immune control, synapse-resolved maintenance control |
| Eide et al. (2023) | Intrathecal gadobutrol retention and pharmacokinetic CSF-to-blood clearance variables | Bounded intrathecal-tracer / CSF-to-blood-clearance-capacity calibration | Natural-sleep whole-brain clearance truth, local drainage-segment assignment, cell-specific immune controller state |
| Hirschler et al. (2025) | Region-specific CSF-mobility MRI and driver mapping | Bounded CSF-mobility calibration | Direct flux ground truth, protein-efflux truth, synapse-resolved clearance control |
| Dagum et al. (2026) | Model-based overnight Aβ / tau efflux to plasma in a randomized crossover sleep study | Bounded model-based biomarker-efflux calibration | Direct segmental drainage assignment, local immune-controller identity, moment-to-moment maintenance state |
The next overread to stop is to treat same-subject or same-brain as if those labels already solved same-state continuity. The primary literature does not support that shortcut. Lu et al. (2023) show that preservation route changes extracellular-space retention and downstream ultrastructure, Bosch et al. (2022) show that correlative live-to-EM work is a landmark-based multistage bridge, MICrONS Consortium et al. (2025) show that same-brain function plus EM remains a sequential local pipeline, and Egger et al. (2024) show that even repeated live EEG can drift over a 10-hour window enough to motivate adaptive decoders. Therefore, on this page, specimen identity is read only as one bridge ingredient, not as same-state evidence by default.
The next correction is narrower. The primary literature does not support treating bridge burden as one scalar that grows only with elapsed time. Lu et al. (2023) and Idziak et al. (2023) show that live-to-fix bridges are already transformation-dominated. Musall et al. (2019), Benisty et al. (2024), and Egger et al. (2024) show that same-day repeated live measurements can drift through spontaneous behavior, connectivity structure, and decoder-relevant EEG dynamics within hours. Hengen et al. (2016) and Xu et al. (2024) then show that sleep / wake crossing changes homeostatic and computational regime rather than merely adding more delay. Therefore, on this page, readers should ask not only how long the bridge was but also which hidden-state families were most exposed by that bridge type. The operating matrix is summarized in Wiki: State-Continuity Bridge and enforced in Verification: State-Continuity Bridge Card.
The literature route for U3 also needed one more correction. The current primary literature does not support reading all neuromodulatory papers as one human-state meter. Reimer et al. (2016) is a mixed arousal proxy, Lohani et al. (2022) and Neyhart et al. (2024) are local acetylcholine sensing routes, Hansen et al. (2022) and Goulas et al. (2021) are receptor / transporter atlas priors, Wong et al. (2013) is occupancy PET, and Koepp et al. (1998) plus Erritzoe et al. (2020) are challenge-linked displacement / release-sensitive PET. Therefore, on this page, U3 now asks readers to name the inferential object, time window, spatial scope, and model / challenge burden before any neuromodulatory paper is read as evidence about the current whole-brain transmitter state.
Another missing U3 split was still hiding inside generic support language. Galarreta & Hestrin (1999) is a gap-junction coupling-network route, Anastassiou et al. (2011) is an endogenous-field / ephaptic route, Graydon et al. (2014) is a local extracellular-space geometry / transmitter-dilution route, Kilb et al. (2006) plus Xie et al. (2013) show osmotic or sleep-linked extracellular-space shifts, Voldsbekk et al. (2020) remains a bounded human diffusion-MRI proxy clue, and Feld et al. (2026) remains a human perturbation-conditioned electrical-synapse clue with pharmacological caveats. Therefore, on this page, U3 no longer lets shared extracellular / electrical state act as one common hidden-state meter. Readers now have to name whether the paper advances coupling, field effects, extracellular geometry / diffusion barriers, osmotic or sleep-linked regime shift, or only a bounded human clue.
Recent maintenance-state papers also changed in kind, not only in number. Hadzibegovic et al. (2025), Benoit et al. (2025), Hengen et al. (2016), Tallman et al. (2025), Huber et al. (2013), Kuhn et al. (2016), Zrenner et al. (2018), Khatri et al. (2025), Fehér et al. (2026), Alfonsa et al. (2025), Bell et al. (2010), Pandey et al. (2023), Mai-Morente et al. (2025), Terceros et al. (2026), Peterson et al. (2025), Vierra et al. (2023), Pandey et al. (2021), Aiken & Holzbaur (2024), Vishwanath et al. (2026), Kim et al. (2025), Suzuki et al. (2011), Silva et al. (2022), Pavlowsky et al. (2025), Greda et al. (2025), Dewa et al. (2025), and Bukalo et al. (2026) do not merely say that "support variables matter." They sharpen which hidden-state families remain outside connectome-only reading: intrinsic-excitability allocation / early engram bias, AIS / channel-state plasticity, homeostatic set-point / recovery control, human local clinical-unit allocation, human sleep-homeostasis / plasticity proxies, human state-gated perturbation proxies, ionic / chloride regulation, transcriptional stabilization gates, post-transcriptional RNA control, phospho-signaling / second-messenger routing, local proteostasis / tag-capture balance, cargo-routing state, bioenergetic / mitochondrial support, glial substrate-routing across lactate, ketone-body, fatty-acid, and apoE / sortilin-linked lipid routes, neurovascular-unit / BBB / pericyte support, clearance / immune support, astrocyte multiday traces, and astrocyte-enabled neural representations. The human intrinsic-excitability papers are therefore not one common meter but a bounded subfamily split with different ceilings and different missing controllers.
One more U3 split was still missing from the literature route. The current primary literature does not support reading sleep replay, TMR, and closed-loop sleep stimulation as if they already formed one reusable maintenance meter. Ngo et al. (2013) is a phase-locked slow-oscillation stimulation route, Whitmore et al. (2022) shows that benefit depends on ample and undisturbed slow-wave sleep, Baxter et al. (2023) shows that oscillation gains can occur without extra motor-memory gain, Geva-Sagiv et al. (2023) is an intracranial hippocampal-prefrontal synchrony intervention route, Schreiner et al. (2024) is a spindle-locked ripple route, Whitmore et al. (2024) shows memory-age dependence under sleep disruption, Jourde et al. (2025) shows that spindle-targeted auditory stimulation can either amplify sigma or truncate the spindle depending on timing, Duan et al. (2025) shows item-level electrophysiological variability in human consolidation, Deng et al. (2025) shows a time-windowed NREM physiology gate, and Shin et al. (2025) shows a difficulty-conditioned personalized TMR route. Therefore, on this page, U3 now requires technical readers to name the cueing or intervention route, sleep-integrity / disturbance burden, NREM physiology gate, oscillation-versus-memory effect split, and memory-selection / age regime before any sleep replay paper is read as evidence about a maintenance controller.
One remaining U3 compression was still hiding between neuronal bioenergetic support and macro human energetic proxy progress. The current primary literature does not support reading those papers as one metabolic-support lane. Suzuki et al. (2011) constrain a lactate-shuttle support route, Silva et al. (2022) constrain a glia-to-neuron ketone-body route under starvation, Pavlowsky et al. (2025) constrain a glia-to-neuron fatty-acid route during intensive learning, and Greda et al. (2025) constrain apoE / sortilin-dependent neuronal lipid uptake and fuel-choice gating. By contrast, the living-human 31P, deuterium, and astrocyte-related PET rows on this site remain macro energetic or target-defined proxy classes, not direct identification of the active glial supplier, fuel class, transport route, or neuronal sink. Therefore, the safe U3 reading now has to say whether the paper advances local neuronal bioenergetic control, a named glial substrate-routing route family, or only a bounded human proxy class.
The literature route still had one remaining compression inside U3. The current primary literature does not support reading post-transcriptional RNA evidence as one generic maintenance controller or one reusable m6A slot. Wang et al. (2015) is a neuron-specific splice-isoform route whose downstream object is chromatin / transcriptional elongation control. Dai et al. (2019) is a splice-dependent transsynaptic receptor-balance route. Shi et al. (2018) is a YTHDF1 translation route, whereas Zhuang et al. (2023) and Li et al. (2025) are YTHDF2-mediated decay / stability routes with different scope: dentate-gyrus-specific reader assignment plus mossy-fiber / MF-CA3 development on the one hand, and forebrain-scale enhancement of activity-dependent protein synthesis and hippocampus-dependent memory on the other. Peterson et al. (2025) is an ADAR2 / GluA2 editing route for homeostatic scaling, and Joglekar et al. (2024) is a long-read atlas / observability-ceiling route rather than a living-human whole-brain in vivo measurement route. Therefore, on this page, U3 no longer lets one RNA paper stand in for current whole-brain RNA-controller state, one universal hippocampal m6A-reader assignment, or one solved human observability class. Readers now have to name whether the paper advances splice-isoform control, transsynaptic splice-dependent receptor balance, m6A translation, dentate-gyrus- or forebrain-scale YTHDF2-mediated decay / stability, RNA editing, or atlas ceiling.
The literature route also still had one remaining compression inside U3. The current primary literature does not support reading local proteostasis evidence as one generic consolidation controller. Frey & Morris (1997) and Shires et al. (2012) are tag / capture eligibility routes. Govindarajan et al. (2011) is a branch-level integration route. Fonseca et al. (2006), Pandey et al. (2021), and Chalatsi et al. (2026) are synthesis-degradation / autophagy-linked proteostasis routes, but at different controller scales: late-LTP maintenance balance, translation-coupled long-term-memory formation, and PVALB-interneuron proteostasis / excitability with hippocampus-dependent memory, respectively. Lee et al. (2022) and Thomas et al. (2025) are turnover-resistant persistence or candidate tag-substrate routes. Therefore, on this page, U3 no longer lets one proteostasis paper stand in for current whole-branch capture readiness, one generic autophagy controller, or one solved human observability class. Readers now have to name whether the paper advances tag / capture eligibility, branch-level integration, synthesis-degradation balance, autophagy-linked remodeling, inhibitory-circuit proteostasis / excitability, or turnover-resistant persistence / candidate tag substrate.
The literature route still had one more maintenance-side compression. The current primary literature does not support reading cargo-routing evidence as one generic trafficking background. Park et al. (2006) and Correia et al. (2008) are postsynaptic AMPAR / recycling-endosome delivery routes. Uchida et al. (2014) and Wong et al. (2024) are transport-path gating or local vesicle-confinement routes. Nakayama et al. (2017), Liau et al. (2023), and Espadas et al. (2024) are dendritic / synaptic RNA-cargo organization routes. de Queiroz et al. (2025) is an axonal RNA-localization route required for long-term memory, and Aiken & Holzbaur (2024) is a presynaptic cargo-delivery / pausing route in human neurons. Therefore, on this page, U3 no longer lets one cargo paper stand in for whole-neuron delivery correctness, one generic RNA-transport controller, or proof that the right receptors, RNA cargoes, or presynaptic components reached the right branch, spine, or bouton. Readers now have to name whether the paper advances postsynaptic receptor delivery, transport-path gating / local vesicle confinement, dendritic or synaptic RNA-cargo organization, axonal RNA localization, or presynaptic cargo retention / pausing.
One more correction is still necessary. U3 maintenance-state causality and U1/U7 living-human observability do not move on one common ladder just because both accelerated in 2025-2026. Hadzibegovic et al. (2025), Terceros et al. (2026), Dewa et al. (2025), and Bukalo et al. (2026) sharpen controller-side or local-circuit causal dependence, whereas Lucchetti et al. (2025), Hirschler et al. (2025), and Dagum et al. (2026) sharpen bounded human observability classes. These papers differ in species, spatial unit, and inferential object. The date rule matters in practice: Nature lists Terceros et al. as Published: 26 November 2025 while the citation line is Nature volume 649, pages 1254-1263 (2026); Dewa et al. is Published: 15 October 2025 with issue date 04 December 2025; Hirschler et al. is Published: 14 October 2025; Dagum et al. is Published: 27 January 2026; and Bukalo et al. is Published: 11 February 2026. If this evidence bank mixes those conventions or lets adjacent dates stand in for one ladder, chronology itself begins to collapse two ladders into one. Therefore, on this page, technical readers should name whether a paper advances local causal relevance or bounded human observability before letting the year ordering influence the frontier judgment.
The next missing split was inside U3 itself. Bell et al. (2010), Kisler et al. (2020), Pandey et al. (2023), Swissa et al. (2024), and Mai-Morente et al. (2025) do not describe a generic vascular nuisance. They split into pericyte controller causality, neurovascular coupling dependence, activity-linked BBB modulation, and capillary support for memory-related function. Meanwhile, Padrela et al. (2025) and Chung et al. (2025) are important because they raise a human BBB permeability / exchange proxy route, but that route still remains a macro proxy rather than a direct readout of cell-specific neurovascular maintenance control. Therefore, on this page, U3 now keeps controller-side neurovascular biology separate from human BBB proxy progress instead of hiding both inside clearance or generic support language.
On the core pages, thermodynamic claims already require a route card, but this evidence bank had still left U10 too close to a generic "physical grounding" bucket. Lynn et al. (2021) estimated coarse-grained entropy-production lower bounds from fMRI state transitions, de la Fuente et al. (2023) used inversion decoding on ECoG, Nartallo-Kaluarachchi et al. (2025) used multilevel visibility-graph irreversibility on MEG, Ishihara & Shimazaki (2025) estimated model-based entropy flow from spike ensembles, and Epp et al. (2025) showed that BOLD changes can oppose oxygen-metabolism changes. Therefore, on this page, U10 is now read as a split among route families plus a separate physiology-side grounding burden, not as one common thermodynamic measurement frontier.
The default route on this page is still organized by unresolved question. If you already know that you want only the 2025-2026 technology / natural-science frontier papers first, jump directly to the Paper Collection: 2025-2026 technical-only shortlist. That table gives concrete anchor papers for EEG foundation-model governance, field-formation visibility, destructive ultrastructure audit, living-human observability, state-continuity bridge limits, neurovascular / BBB route-family splits, shared extracellular / electrical-state route-family splits, neuromodulatory route-family splits, sleep replay / replay-coupling route-family splits, proteostasis / cargo route-family splits, maintenance-state boundary papers, direct source validation, closed-loop communication, and thermodynamic route-family splits before you return here to place them in U1/U7/U4/U13/U8/U3/U10.
U0 / U12 / U15 still matter, but they are not placed on the default technical route. The reason is that what needs to be fixed first here is not metaphysics or legal theory, but what is currently measurable, how far direct validation goes, where the closed loop breaks, and which hidden states remain. These groups are easier to read correctly after the experimental front has already been mapped.
Collection and screening statistics
- Worker tasks: 50
- Raw citations: 499
- Curated citations: 302
- Dropped as noise/low-relevance: 97
- Unique citation keys: 292
Quality gate (contamination prevention)
- Keep only literature that matches the U-specific keywords and the neuroscience anchor terms.
- Automatically exclude contamination from unrelated domains such as cosmology or tumor imaging.
- Merge duplicates by DOI/URL/title and keep only the highest-scoring record.
- For each U, state both the area with some traction and the still-unresolved portion.
Minimum notes to leave when adding literature
| Minimum field to leave | Example | Why it is needed |
|---|---|---|
| Which U it belongs to | U4: causal equivalence / U11: approximation of consciousness indicators | If literature is accumulated without a destination, it becomes difficult to route it back into the unresolved-question map later. |
| Whether it is primary research, a review, or news/media | Primary / Review / Media | Even if all of them are "references," the weight of the conclusion and the way the source should be tracked are different. |
| One-sentence explanation of the relationship | "Candidate evidence for U1 because it quantifies inverse-problem uncertainty." | The title alone is not enough to remember later why the item belongs on this page. |
| Current status | source_logged / curated / noise_excluded | This prevents accepted intake logs from being confused with already integrated evidence. |
| Source URL or DOI | DOI: 10.xxxx / arXiv: xxxx.xxxxx | If a third party cannot get back to the same source, the citation cannot be audited. |
Meaning of the status labels
| Label | In plain language | Work still remaining |
|---|---|---|
| source_logged | The URL or DOI has been accepted into the intake layer. | Relevance checking, primary-source tracing, and assignment to a U still remain. |
| curated | The item has been organized according to the issue structure of this evidence bank. | There may still be overlap with other U groups or replacement by stronger evidence later. |
| noise_excluded | The item was excluded as low relevance or as contamination. | The exclusion reason should be retained so that the same contamination pattern does not recur. |
source_logged means intake accepted, curated means organized, and noise_excluded means intentionally excluded. These are separate from venue labels such as Scopus or arXiv, separate from literature-type labels such as Review or Media, and separate from evidence class. If those axes start to blur together, go back to the Wiki: Source Types, Status Labels, and Evidence Classes.
Latest added inputs (Issue #261-#263)
Based on content-addition issues #261 to #263, received on February 23, 2026, we registered the primary reference URLs in the Evidence Bank. This section keeps "accepted links" separate from items that are still pending academic integration or peer-review screening.
- [Media] "Correct code" may not be enough to imbue AI with consciousness (Issue #261)
status=source_logged / Continue tracing to primary academic literature - [Review] On biological and artificial consciousness: A case for biological computationalism (Issue #262)
status=source_logged / A thorough reading summary of the review text will be implemented in the next update - [arXiv] Scaling and context steer LLMs along the same computational path as the human brain (Issue #262)
status=source_logged / Plan to evaluate the possibility of connecting to WBE identity verification - [arXiv] Primal-Attention: Self-attention through Asymmetric Kernel SVD in Primal Representation (Issue #263)
status=source_logged / Rescreening target for direct relevance to U0-U15
This section is the "input acceptance log". The acceptance/rejection decision (U map reflection, citation priority, noise exclusion) will be determined in subsequent regular updates according to the quality gate procedure.
This section is an intake queue, not a frontier-ranking page. If you want to follow the primary evidence in technology and the natural sciences, start instead from the Technology and Natural Sciences priority route above, or from U1 / U7 first, then the state-continuity bridge between U7 and U8, and then U4 / U13 / U8 / U3 / U10 in the main text.
Current-status map by U
Here, ID is the name tag of the problem, Current status is how far it has been solved, and Number of citations is the amount of relevant evidence. A large number of citations does not necessarily mean that the conclusion is fixed.
| My interests | See first U | Reason |
|---|---|---|
| I want to know the limits of EEG estimation, source imaging, and time synchronization | U1 / U7 | This is because we need to know how far we can estimate from observations and how effective direct validation and synchronization rules are. |
| I want to know whether same-subject / same-brain really means one state sample | U7 / U8 | This is where acquisition order, live-to-fix delay, cross-day regime change, and bridge validation have to be named before same-state language is allowed. |
| I want to read effective-connectivity claims without overpromoting them | U4 | This is because a directed graph or a better model fit can otherwise be mistaken for discovered causal wiring rather than a model-conditioned result. |
| I want to separate decode success from WBE claim | U13 | This is because observational coincidence and causal preservation, local communication and whole-brain emulation can be read separately. |
| I want to know how to break long-term closed-loop | U8 | This is where the issues of delay, jitter, recalibration burden, and long-term drift come together. |
| I want to know the hidden state outside the connectome | U3 | This is because the missing maintenance-states including sleep, myelin / oligodendrocyte timing support, glial substrate-routing, astrocyte-state, and neurovascular-unit / BBB / pericyte support are concentrated here. |
| I would like to see it including physical cost and dissipation | U10 | This is because it is an entry point to read not only the computational complexity but also the dissipation and energy constraints during implementation. |
For readers coming from technology and the natural sciences, the default route is U1 / U7 → bridge (U7 / U8) → U4 → U13 → U8 → U3 → U10. U11 is treated as a secondary route for experimental comparison, while U0 / U12 / U15 are treated as auxiliary routes that branch off and then return to the main line.
| Big problems | Included U | Roughly what to look at |
|---|---|---|
| Definition and evaluation | U0 / U11 / U13 / U14 | What is called "the same", how to distinguish between imitation and verification, and how to establish make-up exams. |
| Measurement and estimation | U1 / U7 (+ bridge to U8) | How much can we learn from observational data, how to align multiple modalities, and when sequential same-subject bridges still fail same-state continuity. |
| Causality and implementation stability | U4 / U8 / U10 | Whether interventions still match, whether the system stays stable in closed loop, and whether the physical cost remains within bounds. |
| Boundaries and identity | U3 / U12 | How much should be included to be considered a subject, and how should identity be handled after divergence? |
| System and public operation | U15 | Can it be operated not only in terms of technology but also in terms of suspension standards, disclosure standards, and how to place responsibilities? |
| ID | Problem name | Current situation | Number of citations | Unresolved center |
|---|---|---|---|---|
| U0 | Operative identity | Partial resolution | 23 | Identity assessment benches including intervention experiments are unstandardized. |
| U1 | Inverse problem identifiability | Partial solution | 26 | Lack of generalization error bound across inter-subject and inter-device uncertainties. |
| U3 | Biological boundary | Partial resolution | 26 | The threshold for what level of granularity must be included to be considered "equivalent entities" has not been determined. |
| U4 | Causal equivalence | Partial resolution | 26 | Causality identification in high-dimensional time series strongly depends on data conditions. |
| U7 | Multimodal alignment | Partial resolution | 26 | There is a lack of common rules that define the tolerance range for synchronization errors for each task. |
| U8 | Closed-loop stability | Partial resolution | 26 | Lack of drift tolerance and reproducibility evaluation in long-term operation. |
| U10 | Thermodynamic consistency | Exploration stage | 26 | Actual measurement research on the effective lower bound in neural circuit implementation is limited. |
| U11 | Validity of consciousness index approximation | Partial solution | 26 | There is a lack of public benches that compare theories under the same conditions. |
| U12 | Branch identity | Exploration stage | 19 | Operational regulations (auditing/responsibility tracking) directly linked to the technical system are not in place. |
| U13 | Mimitation separation | Partial resolution | 26 | There is a lack of unified benches that can simultaneously evaluate imitation and causal preservation. |
| U14 | Possibility of supplementary exam | Partial solution | 26 | Common audit rules spanning neuroscience and machine learning are insufficient. |
| U15 | Institutional integration | Exploration stage | 26 | There is a lack of implementation standards that link technical indicators and legal suspension criteria. |
The U number is an internal management code and is not meant to be memorized. It is enough to first find a cluster that is close to you in the "big problem group" above, and then go down to the individual U's.
A partial solution indicates that some foundation is present, and an exploration stage indicates that the comparative basis is still weak. Unstandardized, Insufficient, and Undeveloped differ in the type of what is missing. If you want to see the difference in one page, please refer to Wiki: How to read partial solution/exploration stage/undeveloped.
Formal definitions of the unresolved questions (U0-U15)
| ID | strict definition |
|---|---|
| U0 | When the intervention set I and time window T are fixed, can the conditional distribution difference D(P_bio, P_model | I, T) between the biological system and the model system be defined below the threshold? |
| U1 | When estimating potential source x from observation y, is it possible to simultaneously report the concentration, identification error boundary, and condition number of the posterior distribution p(x|y)? |
| U3 | Can the boundaries of the minimum components (neurons, glia, neuromodulators, body/environment loop) to be included in the subject model be determined without decreasing predictive performance? |
| U4 | Can we determine the causal mechanism match between a biological system and a model system based on intervention bifurcation (counterfactual/do-intervention) rather than observational match? |
| U7 | Is it possible to fix EEG/fMRI/behavioral/physiological time/spatial/preprocessing logs so that they can be audited and reach the same conclusion through reanalysis? |
| U8 | Can closed-loop neural control operate stably without violating safety constraints under delay, jitter, noise, and drift? |
| U10 | Is it possible to map irreversibility, dissipation, and lower energy limits of information processing to a neural computational model and set measurable falsification conditions? |
| U11 | Enables data-driven comparisons of the conditions under which indicators such as IIT/PCI/GWT match and under which conditions they deviate. |
| U12 | Can the identity, responsibility, and ownership of rights of multiple entities that occur after duplication/branching be defined in a format consistent with technical evaluation? |
| U13 | Can we experimentally separate the evaluation axis that identifies high-performance imitation (verbal/behavioral output) and preservation of internal causal structure? |
| U14 | Can we always maintain open operations that allow third parties to reach the same conclusion using the same data, the same procedures, and the same evaluation contract? |
| U15 | Is it possible to link technical evaluation KPIs and legal/ethical KPIs and define suspension criteria and disclosure criteria at the operational level? |
Issue-lead routing and RQ audit (2026-02-24)
We reviewed GitHub issue leads #264/#265 and checked the number and diversity of research questions in each U section. The evidence rule on this page is now explicit: once a primary DOI or a review-level route map is verified, the issue lead is retained only as routing metadata and is no longer displayed as if it were itself an evidence class. In overlap-heavy sections (U3/U7/U8/U12/U13/U14), evaluation axes were separated and questions were expanded.
Issue-lead routing (completed)
| Issue lead | Verified source class | Evidence routing decision | Status |
|---|---|---|---|
| #264 | Kipnis et al. (2025) as a review / route-mapping source, not a controller-side primary anchor | Used only to route the U3 background map; controller-side and human-proxy claims in the main U3 section remain anchored to primary papers rather than to the review itself. | Reflected with source class preserved |
| #265 | Secondary-news lead resolved to the primary paper Horikawa (2025) | Routed to U13 only after replacing the news-level intake with the primary Science Advances paper in the integrated evidence list. | Reflected with primary DOI |
This evidence bank does not let a review article inherit the status of a controller-side primary result, and it does not let a news URL remain visible as if it were an evidence class once the primary paper is known. Review papers can map route families, and secondary coverage can flag a lead, but integrated evidence on this page is keyed to the verified source class named in the cited row.
RQ count and diversity assessment
| U | Number of RQs before update | Number of RQs after update | Diversity evaluation |
|---|---|---|---|
| U0 | 4 | 4 | High (separate definition, threshold, and branch) |
| U1 | 4 | 4 | Medium (estimated uncertainty center) |
| U3 | 4 | 6 | Medium (axis extension to structure / humoral / immune support) |
| U4 | 4 | 4 | High (separate identification, intervention, and refutation) |
| U7 | 4 | 6 | Medium (extended to synchronization, QC, and loss tolerance) |
| U8 | 4 | 6 | High (separate stability, safety, and operational recovery) |
| U10 | 4 | 4 | High (separate theory, observation, and cost) |
| U11 | 4 | 4 | High (separate theoretical comparison, calculation amount, and failure conditions) |
| U12 | 4 | 6 | High (add legal attribution/consent operation) |
| U13 | 4 | 6 | Medium (adds restoration accuracy/leak detection axis) |
| U14 | 4 | 6 | Medium (add negative example publication/reproduction cost axis) |
| U15 | 4 | 4 | High (separates legal concepts, auditing, and suspension criteria) |
| Total | 48 | 60 | Duplicate clusters distributed |
- Separate the evaluation axes of "measurement," "causation," and "operation" and create separate questions even on the same theme.
- Literature prioritizes primary research, and news articles are retained as supplementary references with primary research links.
- Replaced documents with low relevance/duplication tendency, and maintained the number of documents for each U.
Additional literature search (2026-02-24, second batch)
We re-searched the primary literature from 2024-2026 and added highly relevant DOIs to the Representative references of each U. This time's additions were selected based on three axes: "theory update," "implementation update," and "audit rule update."
| U | Additional DOI | Key points |
|---|---|---|
| U1 | 10.1109/JSEN.2024.3502917 | 2025 Review of M/EEG Inverse Problems |
| U4 | 10.1109/TBME.2024.3423803 | Causal modeling of dynamic effective connections in the developmental process |
| U7 | 10.1038/s41597-024-03559-8 | Reproducible motion data organization using Motion-BIDS |
| U8 | 10.1088/1741-2552/adbb20 | Modularization of closed-loop BCI experiment infrastructure |
| U10 | 10.1016/j.tics.2024.03.009 | Review of the connection between mental processes and thermodynamics |
| U11 | 10.1038/s41586-025-08888-1 | Adversarial verification of GNW and IIT |
| U12 | 10.20318/universitas.2025.9574 | European and Latin American comparative regulation of neurological rights |
| U13 | 10.1088/1741-2552/adfab1 | Latest report on brain-to-text combined use with LLM |
| U14 | 10.1098/rsos.242057 | Scoping review of reproducibility interventions |
| U15 | 10.1007/s11673-025-10440-9 | Responsible ethical governance strategies for neurotechnology |
Integrated deepening update (2026-03-01)
The old research_deepening_*.md files have been integrated into this section. It is not divided into public pages, so you can track what has been absorbed into the main text andwhere raw artifacts remain all at once.
The information for Rounds 1 to 114 was not deleted, but the roles of the public text and automation/ were re-separated. The reader will be shown a summary and judgment materials in the main text, and machine processing results and operation logs will be saved in CSV/audit memo.
| U | Total number of RQs | Deep digging completed | Key points left in the main text |
|---|---|---|---|
| U0 | 4 | 4 | While the theory of operational identity is progressing, it has been determined that bench specifications including intervention responses have not yet been developed. |
| U1 | 4 | 4 | Inverse problems have reached the stage where not only point estimation but also uncertainty propagation and interval disclosure are required. |
| U3 | 6 | 6 | Glia, lymphatic system, and immune surveillance were identified as candidates for the "minimum component to include." |
| U4 / U7 / U8 | 16 | 16 | The conditions for causal equivalence, BIDS/synchronization, and closed-loop delay have been specified from the viewpoints of observation, reproduction, and safe stopping. |
| U10 / U11 | 8 | 8 | For thermodynamic consistency and consciousness index approximation, we have organized that KPIs and failure conditions need to be fixed before making theoretical claims. |
| U12 / U15 | 10 | 10 | In the regulation track, we have standardized the trail gate, remonitoring, and restart ledger before updating the text. |
| U13 / U14 | 12 | 12 | With regard to imitation separation and repeatability, we have strengthened the ability to distinguish between minimum core literature and supplementary literature. |
| Total | 60 | 60 | Public addenda for old Rounds 1–114 have been consolidated into this section. |
What was absorbed into the public page this round
| Round group | What I left in the main text | Representative trails |
|---|---|---|
| Round 1–12 | Reflected U-specific simplification supplements, additional evidence, and minimum core literature set of 2 required books + 1 supplementary document. | Round 10 core set |
| Round 13–18 | We have inspected the quality of supplementary documents, reclassified tags, divided them into two tiers of required/auxiliary documents, and established a 3-step reading order and time guide. | Round 17 layering / Round 18 timed path |
| Round 19–39 | Aligned U12/U15 regulatory tracks and fixed jurisdiction labels, audit priority queues, and body update templates. | Round 19 alignment / Round 28 external dependency split |
| Round 40–61 | We have standardized the trail integrity, publish gate, unresolved escalation, and closing conditions before publishing. | Round 57 publish gate |
| Round 62–114 | Reopen/reentry/follow-up remonitoring and stabilization confirmation can be operated as a separate ledger. | Round 70 reentry packet / Round 100 stability ledger |
Key points retained in the page after deepening
Representative Findings
- U0: While there is a wealth of theory regarding operational identity, bench specifications including intervention responses are still lacking.
- U1: For inverse problems, not only point estimation but also uncertainty propagation and confidence interval disclosure should be treated as minimum requirements.
- U3: Glia, lymphatic system, and immune surveillance emerged as supporting indicators to review the “minimum inclusions.”
- U7 / U8: BIDS, synchronization errors, and closed-loop delay tolerances are directly linked to both repeatability and safe stopping.
- U10 / U11: Thermodynamic consistency and consciousness index approximation are issues where KPIs and failure conditions should be fixed before theoretical conflict.
- U12 / U15: As the systems and regulations are highly dependent on external entities, it is essential to perform trail gates and remonitor operations before updating the main text.
Where the raw artifacts and audits live
The coverage audit for all 60 questions is rq_deepening_consistency_audit_2026-03-01.md, the total by U is rq_deepening_coverage_summary_2026-03-01.csv, and the citation-relevance audit is rq_reference_relevance_audit_2026-03-01.md.
The old research_deepening_continue_guide_2026-03-01.md, which previously functioned as an operations guide, has been removed from the public page. The current policy is to keep only the summary here and leave the raw artifacts under automation/.
U0: Operational identity
Strict definition: When the intervention set I and time window T are fixed, can the conditional distribution difference D(P_bio, P_model | I, T) between the biological system and the model system be defined below the threshold?
Research question breakdown
- When identity judgment is separated into "observation matching" and "intervention response matching", which one should be regarded as a necessary condition or a sufficient condition?
- How to fix the correspondence between time synchronization (in ms) and state expression (behavior, neural activity, physiology).
- How to set the threshold for identity judgment for each task and how to exclude overfitting models.
- Which evaluation axis should be used to define the "same individual" in the case of divergence/duplication?
What has some traction now (areas with accumulated literature)
- The discussion framework that distinguishes between psychological continuity, informational continuity, and functional equivalence has been organized in the literature.
- When comparing step-by-step substitution and scan-and-copy, there has been an accumulation of objections that procedural differences are not a sufficient condition for identity.
- The direction of transforming identity into an operational judgment problem rather than a single metaphysical proposition is shared.
Representative references: Continuity: Kinks Not Breaks, Enhancement, Mind-Uploading, and Personal Identity, The Fallacy of Favoring Gradual Replacement Mind Uploading Over Scan-and-Copy.
What still needs research (unresolved)
- Identity evaluation benches including intervention experiments are not standardized.
- Quantitative indicators of identity maintenance (weekly to monthly scale) including long-term drift have not been established.
- There is a lack of rules to connect responsibility attribution and evaluation attribution of the subject to technical evaluation after branching.
Representative references: Whole Brain Emulation, State of Brain Emulation Report 2025, The Right to Personal Identity.
Major prior research (12 re-examinations)
- [Cambridge] The Right to Personal Identity (2026)
- [OSF] Nondestructive Mind Uploading and the Stream of Consciousness (2023)
- [arXiv] State of Brain Emulation Report 2025 (2025)
- [Oxford] Enhancement, Mind-Uploading, and Personal Identity (2016)
- [Cambridge] Personal Ontology and Life after Death, Part 2: Mind Uploading (2024)
- [Synthese] I am no abstract object (2024)
- [SSRN] The Fallacy of Favoring Gradual Replacement Mind Uploading Over Scan-and-Copy (2015)
- [OSF] The Fallacy of Favoring Gradual Replacement Mind Uploading Over Scan-and-Copy (2023)
- [MIT Press] Continuity: Kinks Not Breaks (2017)
- [MIT Press] Whole Brain Emulation (2015)
- [Patterns] No legal personhood for AI (2023)
- [Minds and Machines] Uploading and Branching Identity (2014)
U1: Inverse problem identifiability
Strict definition: When estimating potential source x from observation y, is it possible to simultaneously report the concentration, identification error boundary, and condition number of the posterior distribution p(x|y)?
The weak point of this U1 summary was to place probabilistic inverse solvers, conductivity-sensitive forward models, and direct-validation benchmarks under one shared "inverse progress" label. The primary literature does not support that shortcut. Luria et al. (2024), Tong et al. (2025), and Feng et al. (2025) improve how candidate sets, uncertainty maps, or debiased inference can be exposed inside a stated inverse family. Rimpiläinen et al. (2019), Vorwerk et al. (2024), Vorwerk et al. (2025), and Vorwerk et al. (2026) show that conductivity modelling and estimation materially move EEG and even MEG source results. Mikulan et al. (2020), Pascarella et al. (2023), Unnwongse et al. (2023), and Hao et al. (2025) provide focal-source and clinical validation routes, but they do not define one universal board for focal, sparse, extended, and spontaneous regimes. Therefore this page now reads U1 through three coupled questions: how the candidate set is represented, how forward-model uncertainty is propagated, and which validation class / source regime was actually tested.
| U1 subroute | What it directly answers | Representative primary sources | What it still does not justify |
|---|---|---|---|
| Posterior / solver-family route | Whether the inverse family exposes multiple candidate solutions, uncertainty width, or debiased inference rather than only one polished map. | Luria et al. (2024); Tong et al. (2025); Feng et al. (2025) | A posterior-aware method inside one inverse family is not yet a transfer guarantee across forward models, source regimes, or validation classes. |
| Forward-model / conductivity route | How much skull / tissue uncertainty, conductivity estimation, and geometry assumptions move localization, magnitude, or orientation. | Rimpiläinen et al. (2019); Vorwerk et al. (2024); Vorwerk et al. (2025); Vorwerk et al. (2026) | Reducing conductivity-driven spread does not by itself identify spontaneous or extended sources, and residual weakness remains for deep or brain-base regimes. |
| Validation-class / source-regime route | Whether the method was tested on known stimulation sites, focal in-vivo boards, simultaneous SEEG/ECoG concordance, or another named benchmark regime. | Mikulan et al. (2020); Pascarella et al. (2023); Unnwongse et al. (2023); Hao et al. (2025) | Focal-source or epilepsy-board success is not a universal winner for extended-source reconstruction, spontaneous cognition, or generic human-state recovery. |
Research question breakdown
- Which prior distribution should be used to control ill-posedness in EEG/MEG inverse problems?
- How to propagate uncertainties in cranial conductivity, electrode placement, and noise structure to estimated uncertainties.
- How should abstention or claim downgrading be triggered when different inverse families, regularization settings, or source regimes disagree on the same data?
- In addition to estimated values, should confidence intervals / posterior distributions be included in the publication criteria?
What has some traction now (areas with accumulated literature)
- Posterior-aware and debiased inverse families can now expose alternative source configurations, uncertainty width, or variance estimates instead of only one best map, although these gains remain model-family-conditional.
- Conductivity uncertainty propagation and individual conductivity estimation now have concrete routes that materially change EEG and combined EEG/MEG localization error, rather than staying a purely theoretical warning.
- Open focal-source and simultaneous invasive benchmarks now let researchers compare inverse methods against known stimulation sites or concurrent SEEG references, so direct validation is no longer only a generic future requirement.
- Recent primary literature also makes clear that focal-source, resting-state, simultaneous-SEEG, and extended-source reconstruction are different benchmark regimes rather than one shared leaderboard.
Representative references: Mikulan et al. (2020), Pascarella et al. (2023), Vorwerk et al. (2024), Luria et al. (2024), Tong et al. (2025), Feng et al. (2025), Hao et al. (2025), Vorwerk et al. (2026).
What still needs research (unresolved)
- A common public board still does not compare focal, sparse, extended, and dynamic source regimes under one fixed geometry / conductivity sweep.
- There is still no accepted abstention rule for when cross-solver, cross-parameter, or cross-regime disagreement should stop a claim instead of crowning a winner.
- Direct validation remains concentrated in stimulation, epilepsy, or SEEG-guided settings rather than spontaneous cognition or general human-state recovery.
- Source localization and source-connectivity targets can prefer different regularization settings, so a single hyperparameter optimum still does not define a universal inverse answer.
Representative references: Mahjoory et al. (2017), Pascarella et al. (2023), Unnwongse et al. (2023), Leone et al. (2024), Hao et al. (2025), Vorwerk et al. (2026).
Major previous studies (13 re-examinations)
- [NeuroImage] Consistency of EEG source localization and connectivity estimates (2017)
- [NeuroImage] Improved EEG source localization with Bayesian uncertainty modelling of unknown skull conductivity (2019)
- [Scientific Data] Simultaneous human intracerebral stimulation and HD-EEG, ground-truth for source localization methods (2020)
- [NeuroImage] An in-vivo validation of ESI methods with focal sources (2023)
- [Brain Communications] Validating EEG source imaging using intracranial electrical stimulation (2023)
- [Frontiers in Human Neuroscience] The SESAMEEG package: a probabilistic tool for source localization and uncertainty quantification in M/EEG (2024)
- [Frontiers in Human Neuroscience] Global sensitivity of EEG source analysis to tissue conductivity uncertainties (2024)
- [NeuroImage] Investigating the impact of the regularization parameter on EEG resting-state source reconstruction and functional connectivity using real and simulated data (2024)
- [IEEE Transactions on Medical Imaging] Debiased Estimation and Inference for Spatial-Temporal EEG/MEG Source Imaging (2025)
- [IEEE Transactions on Medical Imaging] Block-Champagne: Imaging Extended E/MEG Source Activation with Empirical Bayesian Uncertainty Quantification (2025)
- [Epilepsia] HD-EEG source imaging with simultaneous SEEG recording in drug-resistant epilepsy (2025)
- [NeuroImage] Global sensitivity of MEG source analysis to tissue conductivity uncertainties (2025)
- [Journal of Neural Engineering] Potential of EEG and EEG/MEG skull conductivity estimation to improve source analysis in presurgical evaluation of epilepsy (2026)
U3: Biological boundaries
Strict definition: Is it possible to determine the minimum components (neurons, glia, neuromodulators, body-environment loop) to be included in the subject model without reducing predictive performance?
Research question breakdown
- How to measure the predicted improvement when adding glial/humoral regulation to a neuron-centered model.
- How to compare the relationship between connectome completeness and functional prediction performance across species.
- How to quantify the functions lost in a model in which the body-environment coupling is removed.
- How to fix the determination of ``minimum required configuration'' based on data rather than theoretical assertions.
- To what extent do prediction accuracy and explainability improve when the glymphatic/meningeal lymphatic system is included?
- At what point does a model that excludes immune surveillance (meningeal immune/inflammatory signals) fail in long-term prediction?
What has some traction now (areas with accumulated literature)
- Connectome reconstruction continues to sharpen the structural baseline, but the current maintenance-side frontier is no longer one generic
glial supportbucket. - Sleep replay / replay-coupling evidence is now also route-split: phase-locked slow-oscillation stimulation, sleep-integrity-dependent TMR, oscillation-gain versus memory-gain dissociation, intracranial synchrony intervention, spindle-locked ripple evidence, spindle-targeted perturbation physiology, and item / memory-age dependence do not constrain one common replay controller.
- Local astrocyte-state causality now has distinct route families: multiday stabilization ensembles, amygdala fear-state representation support, and stress-linked neuron-astrocyte coupling are all primary results, but they do not constrain the same controller.
- Pericyte / neurovascular / BBB biology is now anchored by causal controller-side studies on neurovascular coupling loss, activity-linked BBB modulation, pericyte-derived memory support signals, and capillary-diameter control rather than by one vascular-support slogan.
- Clearance / immune support is also split: meningeal-lymphatic / microglia synaptic-control routes, animal clearance manipulations, living-human BBB water-exchange, tracer-specific BBB transport, choroid-plexus perfusion, blood-to-CSF transport, DCE water cycling, apparent BCSFB exchange / simultaneous BBB-versus-BCSFB exchange, respiration-conditioned net-flow MRI, exercise-conditioned contrast-influx / meningeal-lymphatic flow, CSF-mobility MRI, and model-based overnight biomarker-efflux are different evidence classes with different claim ceilings.
Representative references: Ngo et al. (2013), Whitmore et al. (2022), Baxter et al. (2023), Geva-Sagiv et al. (2023), Schreiner et al. (2024), Whitmore et al. (2024), Jourde et al. (2025), Duan et al. (2025), Deng et al. (2025), Shin et al. (2025), Dewa et al. (2025), Bukalo et al. (2026), Xin et al. (2025), Bell et al. (2010), Kisler et al. (2020), Pandey et al. (2023), Swissa et al. (2024), Mai-Morente et al. (2025), Kim et al. (2025), Padrela et al. (2025), Chung et al. (2025), Zhao et al. (2020), Petitclerc et al. (2021), Anderson et al. (2022), Wu et al. (2026), Petitclerc et al. (2026), Hirschler et al. (2025), Dagum et al. (2026).
The weak point here was not lack of volume but lack of inferential separation. This evidence bank still mixed generic PubMed placeholders, reviews, and controller-side primary papers in a way that let astrocyte-state, pericyte / BBB control, clearance / immune support, and human support-state proxy routes sound closer than they are. The primary literature does not support that compression. Dewa et al. (2025) is a multiday astrocytic memory-stabilization route, Bukalo et al. (2026) is an astrocyte-enabled amygdala representation route, and Xin et al. (2025) is a stress-linked neuron-astrocyte coupling route. On the neurovascular side, Kisler et al. (2020), Pandey et al. (2023), Swissa et al. (2024), and Mai-Morente et al. (2025) constrain different controller objects rather than one common vascular scalar. On the clearance side, Kim et al. (2025) is a meningeal-lymphatics / microglia synaptic-physiology route, whereas Padrela et al. (2025), Chung et al. (2025), Hirschler et al. (2025), and Dagum et al. (2026) are bounded human macro proxy routes with different direct observables and model burdens. Therefore, U3 is now written so technical readers must name the route family, direct observable, and human ceiling before talking about a minimum biological subject model.
What still needs research (unresolved)
- The threshold of what level of granularity must be included to be considered an "equivalent entity" has not been determined.
- The computational cost of integrating structural data and functional dynamics remains high.
- There is still no living-human whole-brain route that directly identifies which replay event, spindle-ripple coupling pattern, or NREM physiology gate preserved a given memory item; current human evidence remains perturbation-, decoding-, subset-, and disturbance-conditioned.
- Comparable living-human in vivo routes are still missing for astrocytic ensemble identity, pericyte controller state, microglia-mediated synaptic controller identity, and synapse-specific clearance control.
- There is still no portable evaluation stack that jointly tracks non-neural factors such as internal milieu, vascular support, clearance support, and immune-state perturbation without collapsing them into one nuisance term.
- Human evidence has advanced beyond one BBB row, but it remains macro and route-specific: BBB water-exchange MRI, tracer-specific BBB PET transport, choroid-plexus perfusion, blood-to-CSF transport, DCE water cycling, apparent BCSFB exchange / simultaneous BBB-versus-BCSFB exchange, respiration-conditioned net-flow MRI, exercise-conditioned contrast-influx / meningeal-lymphatic flow, CSF-mobility MRI, and model-based overnight biomarker-efflux do not yet form a same-subject local-controller readout.
Representative references: Ngo et al. (2013), Whitmore et al. (2022), Baxter et al. (2023), Geva-Sagiv et al. (2023), Schreiner et al. (2024), Whitmore et al. (2024), Jourde et al. (2025), Duan et al. (2025), Deng et al. (2025), Shin et al. (2025), Dewa et al. (2025), Bukalo et al. (2026), Kim et al. (2025), Padrela et al. (2025), Chung et al. (2025), Zhao et al. (2020), Petitclerc et al. (2021), Anderson et al. (2022), Wu et al. (2026), Petitclerc et al. (2026), Hirschler et al. (2025), Dagum et al. (2026).
Major previous studies (17 route-family anchors)
- [Nature] Drosophila central brain connectome update (2024)
- [Nature] The astrocytic ensemble acts as a multiday trace to stabilize memory (2025)
- [Nature] Astrocytes enable amygdala neural representations supporting memory (2026)
- [Cell] Neuron-astrocyte coupling in lateral habenula mediates depressive-like behaviors (2025)
- [Science] Restoring hippocampal glucose metabolism rescues cognition across Alzheimer's disease pathologies (2024)
- [Neuron] Pericytes control key neurovascular functions and neuronal phenotype in the adult brain and during brain aging (2010)
- [Front Cell Neurosci] Acute ablation of cortical pericytes leads to rapid neurovascular uncoupling (2020)
- [Neuron] Neuronal activity drives IGF2 expression from pericytes to form long-term memory (2023)
- [eLife] Cortical plasticity is associated with blood-brain barrier modulation (2024)
- [Nature Communications] Pericyte pannexin1 controls cerebral capillary diameter and supports memory function (2025)
- [Nature] Neuronal dynamics direct cerebrospinal fluid perfusion and brain clearance (2024)
- [Nature] Multisensory gamma stimulation promotes glymphatic clearance of amyloid (2024)
- [Cell] Meningeal lymphatics-microglia axis regulates synaptic physiology (2025)
- [Nature Neuroscience] Region-specific drivers of CSF mobility measured with MRI in humans (2025)
- [Neurobiology of Aging] Blood-brain barrier water permeability across the adult lifespan: A multi-echo ASL study (2025)
- [Nature Communications] Quantitative PET imaging and modeling of molecular blood-brain barrier permeability (2025)
- [Nature Communications] The glymphatic system clears amyloid beta and tau from brain to plasma in humans (2026)
U4: Causal equivalence
Strict definition: Is it possible to determine the causal mechanism match between a biological system and a model system based on intervention bifurcation (counterfactual/do-intervention) rather than observational match?
Research question breakdown
- What are the identification conditions that bring the correlation derived from observational data into a causal graph?
- What is the minimum causal claim that can be verified in intervention experiments (stimulation, suppression, input disturbance)?
- How to connect the theoretical predictions of active inference and DCM to counterfactual evaluation.
- At what level should you declare the failure condition (falsification) for equivalence determination?
What has some traction now (areas with accumulated literature)
- Causal identification theory based on do-calculus/SCM has matured.
- Candidate-model dependence in DCM / effective-connectivity claims is now operationally clear rather than only slogan-level.
- Large model-space search plus whole-brain / faster inversion improve tractability inside named generative assumptions.
- Reliability can be demonstrated under matched task, session, and acquisition conditions, but it remains a measured property rather than an automatic one.
Representative references: Comparing dynamic causal models, Post-hoc selection of dynamic causal models, Comparing dynamic causal models of neurovascular coupling with fMRI and EEG/MEG, Whole-brain estimates of directed connectivity for human connectomics, Reliability of dynamic causal modelling of resting-state magnetoencephalography, A fast dynamic causal modeling regression method for fMRI.
The weak point here was not that the site already separated DCM from SCM on theory pages. The weak point was that this evidence bank still allowed whole-brain scale, faster inversion, or repeatability under matched conditions to sound closer than they are to solved identifiability. Penny et al. (2004) fixed that DCM inference is relative to the models being compared, Rosa et al. (2012) showed that very large model spaces can be searched efficiently from one full model, Jafarian et al. (2020) showed that observation-model choices such as neurovascular coupling assumptions remain part of the inference target, Frässle et al. (2021) pushed directed-connectivity estimation to whole-brain human fMRI, Jafarian et al. (2024) showed that reliability can be strong under closely matched resting-state MEG conditions, and Wu et al. (2024) reduced computational burden further. Therefore, on this site, these papers raise tractability, disclosed assumptions, and reliability under named conditions, but do not by themselves raise U4 to discovered causal wiring or unique mechanism recovery.
What still needs research (unresolved)
- The possibility of causal identification in high-dimensional time series strongly depends on the data conditions.
- Different node sets, priors, hemodynamic choices, and omitted competitors can still materially change the interpretation.
- Robust evaluation in real-world settings including observation noise, delay, and unobserved confounding is insufficient.
- External perturbation / held-out validation that separates observational fit from causal validation is still sparse.
- A public bench that can be used to determine the equivalency of interventions at the WBE level is not yet in place.
Representative references: Characterization and greedy learning of interventional Markov equivalence classes of directed acyclic graphs, The brain's functional connectome is a poor predictor of the brain's causal activity flow, Reliability of dynamic causal modelling of resting-state magnetoencephalography.
Major previous studies (8 re-examinations)
- [NeuroImage] Comparing dynamic causal models (2004)
- [Journal of Neuroscience Methods] Post-hoc selection of dynamic causal models (2012)
- [Human Brain Mapping] Test-retest reliability of effective connectivity in the face perception network (2016)
- [NeuroImage] Comparing dynamic causal models of neurovascular coupling with fMRI and EEG/MEG (2020)
- [PLOS Computational Biology] The brain's functional connectome is a poor predictor of the brain's causal activity flow (2020)
- [NeuroImage] Whole-brain estimates of directed connectivity for human connectomics (2021)
- [Human Brain Mapping] Reliability of dynamic causal modelling of resting-state magnetoencephalography (2024)
- [NeuroImage] A fast dynamic causal modeling regression method for fMRI (2024)
U7: Multimodal alignment
Strict definition: Is it possible to fix the EEG/fMRI/behavioral/physiological time system, spatial system, and preprocessing logs so that they can be audited, and reach the same conclusion through reanalysis?
Research question breakdown
- To what extent should synchronization, QC, and stimulation logs be required with BIDS expansion?
- Can time synchronization errors such as LSL be reduced to verifiable indicators?
- How to audit the influence of differences in settings of artifact removal (ASR, ZapLine, etc.) on results?
- How to fix remeasurement/exclusion criteria when inter-modality alignment fails.
- When automatically comparing preprocessing differences using CI, which recall rate drop should be used as the release block threshold?
- What is the minimum observation set that can maintain the same conclusion even under modality deficit (EEG deficit/fMRI deficit) conditions?
What has some traction now (areas with accumulated literature)
- BIDS/EEG-BIDS and related extensions allow data placement and core metadata specifications to be shared.
- LSL and synchronized logging practices provide a credible synchronization / metadata infrastructure, even though device-side delay truth still has to be measured separately.
- Simultaneous multimodal studies can now expose both shared and divergent cross-modal structure rather than only a common factor.
- Some clinical multimodal bundles improve prediction under declared same-sample or multicentre regimes.
- Accumulated knowledge regarding standard pre-processing (ASR, etc.) for EEG quality control remains useful.
Representative references: The lab streaming layer for synchronized multimodal recording, Motion-BIDS, Multimodal measures of spontaneous brain activity reveal both common and divergent patterns of cortical functional organization, Simultaneous EEG-PET-MRI identifies temporally coupled and spatially structured brain dynamics across wakefulness and NREM sleep, Multimodal prediction of residual consciousness in the intensive care unit, Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness.
What still needs research (unresolved)
- There is a lack of common rules that define the tolerance range for synchronization errors and on-device delay disclosure for each task.
- A shared multimodal factor can still reflect autonomic physiology or opposite-signed quantity changes rather than one target neural variable.
- Multimodal gains can still depend on complete-case slices, missing-modality substitution, cross-centre transfer, and hard-regime disagreement.
- Insufficient auditing of output differences between different preprocessing pipelines.
- Public QC log operation including failure cases is limited.
Representative references: Two common issues in synchronized multimodal recordings with EEG: Jitter and latency, Autonomic physiological coupling of the global fMRI signal, BOLD signal changes can oppose oxygen metabolism across the human cortex, Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness, IMU-integrated Artifact Subspace Reconstruction for Wearable EEG Devices.
Major previous studies (22 re-examinations)
- [Imaging Neuroscience] The lab streaming layer for synchronized multimodal recording (2025)
- [Scientific Data] Motion-BIDS extension for reproducible motion data (2024)
- [BIDS] BIDS Specification 1.10.1 (2025 updated version)
- [Zenodo] BEP036 draft metadata extension (2025)
- [Computer Methods and Programs in Biomedicine] Haemosync: synchronisation algorithm for multimodal hemodynamic signals (2024)
- [PubMed] Simultaneous EEG-fMRI quality and safety study (PMID:34214093)
- [IEEE TBME] Evaluation of EEG-fMRI artifact correction methods (2024)
- [arXiv] Low-rank plus sparse decomposition for simultaneous EEG-fMRI denoising (2024)
- [arXiv] ezBIDS for multimodal BIDS curation and validation (2023)
- [Scientific Data] Multimodal single-neuron, iEEG and fMRI dataset during movie watching (2024)
- [Frontiers in Neuroergonomics] BIDS multimodal dataset with EEG and motion (2024)
- [Reviews in the Neurosciences] Single versus multimodal EEG and fMRI along AD continuum (2024)
- [Sleep] Artifact subspace reconstruction for EEG studies (2023)
- [Frontiers in Human Neuroscience] A Riemannian modification of artifact subspace reconstruction (2019)
- [IEEE BIBM] IMU-integrated artifact subspace reconstruction for wearable EEG (2023)
- [OpenAlex] Two common issues in synchronized multimodal EEG recordings: jitter and latency (2023)
- [Nature Communications] Multimodal measures of spontaneous brain activity reveal both common and divergent patterns of cortical functional organization (2024)
- [Nature Communications] Simultaneous EEG-PET-MRI identifies temporally coupled and spatially structured brain dynamics across wakefulness and NREM sleep (2025)
- [Brain] Multimodal prediction of residual consciousness in the intensive care unit: the CONNECT-ME study (2023)
- [Brain] Multimodal multicentre investigation of diagnostic and prognostic markers in disorders of consciousness (2026)
- [Nature Neuroscience] Autonomic physiological coupling of the global fMRI signal (2025)
- [Nature Neuroscience] BOLD signal changes can oppose oxygen metabolism across the human cortex (2025)
U8: Closed-loop stability
Strict definition: Does closed-loop neural control operate stably without violating safety constraints under delay, jitter, noise, and drift?
Research question breakdown
- How to identify the delay tolerance range of closed-loop BCI from a control theory perspective.
- How to incorporate online calibration and concept drift countermeasures.
- Which index should be used to evaluate stability across individual differences and diurnal fluctuations?
- How to incorporate anomaly detection and failsafe into the evaluation contract.
- When introducing human override, how to convert malfunction rate and recovery time into KPIs.
- How to optimize the relearning frequency in weekly to monthly scale operations by making a trade-off between performance degradation and safety margin.
What has some traction now (areas with accumulated literature)
- The importance of delay and adaptive control in closed-loop BCI is consistent in numerous reports.
- It has been confirmed that short-term stability can be improved by online relearning and adaptive filters.
- The basic architecture of the real-time neurofeedback system has been established.
Representative references: Closed-Loop Mu-Rhythm BCI for Neuroadaptive Control, Dareplane: a modular open-source software platform for BCI research, Self-adaptive multiple-kernel ELM for MI-BCI, EDAPT: Calibration-Free BCIs with Continual Online Adaptation.
What still needs research (unresolved)
- Drift tolerance and reproducibility evaluation in long-term operation is insufficient.
- Unified verification procedures to detect safety constraint violations in advance are lacking.
- Responsibility boundaries and operational standards in the event of a closed loop failure are not yet in place.
Representative references: Fixed-Time Stable Adaptation Law for Safety-Critical Control, Robust Adaptive Discrete-Time Control Barrier Certificate, Calibration-free online test-time adaptation for EEG MI decoding.
Major previous studies (14 re-examinations)
- [Nature Medicine] Chronic adaptive DBS versus conventional DBS in Parkinson's disease (2024)
- [Brain] At-home adaptive dual-target DBS with proportional control (2024)
- [npj Parkinson's Disease] Clinical outcomes and programming strategies in chronic adaptive DBS (2025)
- [npj Parkinson's Disease] ADAPT-PD sensing data and methodology (2024)
- [JAMA Neurology] Long-term personalized adaptive DBS (2025)
- [Nature Reviews Neurology] From adaptive DBS to adaptive circuit targeting (2025)
- [Nature Biomedical Engineering] Movement-responsive DBS with remotely optimized decoder (2026 issue)
- [Expert Review of Medical Devices] Closed-loop DBS systems for neuropsychiatric disorders (2024)
- [medRxiv] Adaptive DBS in Parkinson's disease: Delphi consensus (2024 preprint)
- [IEEE BCI] Calibration-free online test-time adaptation for EEG motor imagery decoding (2024)
- [arXiv] EDAPT: Calibration-Free BCIs with Continual Online Adaptation (2025)
- [Crossref] Closed-Loop Mu-Rhythm BCI for Neuroadaptive Control (2025)
- [Biomedical Signal Processing and Control] Self-adaptive multiple-kernel ELM for MI-BCI (2023)
- [IEEE BCI Workshop] Brain-controlled devices: the perception-action closed loop (2016)
U10: Thermodynamic consistency
Strict definition: Is it possible to map the irreversibility, dissipation, and energy lower limit of information processing to a neural computational model and set measurable falsification conditions?
This section is a bibliographic map, so the descriptions of Landauer, NESS, and EPR are condensed. If you want to clarify only the beginning of the meaning, it will be easier to follow if you look at Wiki: Thermodynamic grounding basics first.
The remaining weakness in U10 was that it still read too much like one bucket about energy cost. The primary literature does not support that compression. Lynn et al. (2021) estimated entropy-production lower bounds only after coarse-graining fMRI dynamics into macrostates, de la Fuente et al. (2023) used inversion decoding on ECoG and showed dependence on feature choice and model complexity, Nartallo-Kaluarachchi et al. (2025) measured multilevel irreversibility from MEG visibility-graph structure, and Ishihara & Shimazaki (2025) estimated model-based entropy flow from spiking populations under explicit kinetic-Ising assumptions. Meanwhile, Epp et al. (2025) showed that BOLD changes can oppose oxygen-metabolism changes, which means energetic wording still needs physiology-side grounding rather than brain-signal irreversibility alone. On this page, U10 now separates brain-signal route family, coarse-graining / state definition, model burden, and physiology-side grounding.
Route-family disclosure alone was still not enough. The current primary literature does not support reading a clean irreversibility estimate as operationally comparable by default. Martínez et al. (2019) showed that waiting-time asymmetry can reveal hidden dissipation even when observable current vanishes, Hartich & Godec (2024) showed that this reading can fail when coarse-graining and time reversal do not commute, Martínez et al. (2024) replied by restricting the original claim to local-in-time coarse-grainings and, where needed, second-order semi-Markov constructions, Blom et al. (2024) showed that coarse lumping can hide dissipative cycles and induce memory, and Baiesi et al. (2024) showed that sparse reverse transitions can force lower-bound strategies rather than direct estimation. Operational comparability is separate again: Poudel et al. (2024) showed motion-sensitive visibility-graph metrics with only selective moderate-to-high reliability in low-motion subsets, Metzen et al. (2024) showed that BOLD variability and complexity do not share one reliability profile, and Chen et al. (2025) showed that strong temporal coupling across simultaneous EEG-PET-MRI can coexist with non-identical spatial organization. Therefore, U10 now also separates reverse-transition support / finite-data handling, memory order / observed-state closure, stability / nuisance sensitivity, and physiology-bridge quality before any thermodynamic route is promoted.
Research question breakdown
- How to apply/interpret the Landauer lower bound in neural computation.
- How to define the correspondence between nonequilibrium thermodynamic index and neural information processing efficiency.
- How to create an observation design that translates theoretical formulas into actual data (neural activity/metabolism).
- How to integrate thermodynamic constraints into WBE calculation cost evaluation.
What has some traction now (areas with accumulated literature)
- Primary studies now support several distinct brain-signal route families rather than one generic thermodynamic readout: coarse-grained entropy-production lower bounds from fMRI state transitions, inversion-decoding asymmetry from ECoG, visibility-graph irreversibility from MEG, and model-based entropy flow from spike ensembles.
- Current papers also support that coarse-graining, timescale, and model assumptions are part of the result, not harmless implementation detail.
- Physiology-side grounding has become a separable audit burden: energetic language is stronger only when a route to oxygen metabolism or another physiology-side observable is disclosed, rather than inferred from irreversibility language alone.
- The route-card burden is now sharper than a route-family label alone: reverse-transition support, memory order / observed-state closure, and finite-data handling can each change whether a reported irreversibility value is interpretable at all.
- Operational promotion is a separate question again: motion sensitivity, metric-family dependence, and cross-modal bridge quality remain estimator-specific rather than solved by one mathematically clean result.
Representative references: Lynn et al. (2021), de la Fuente et al. (2023), Nartallo-Kaluarachchi et al. (2025), Ishihara & Shimazaki (2025), Martínez et al. (2019), Blom et al. (2024), Baiesi et al. (2024), Poudel et al. (2024), Metzen et al. (2024), Chen et al. (2025), Epp et al. (2025).
What still needs research (unresolved)
- There is still no standardized route card that makes fMRI, ECoG, MEG, and spike-based irreversibility results comparable as one common measurement object.
- Brain-signal irreversibility still does not directly yield microscopic dissipation, hardware power, or implementation-level metabolic cost without separate physiology-side or device-side measurements.
- Finite-data regimes, missing backward transitions, and coarse-graining choices still move the estimate enough that cross-paper comparison remains fragile.
- Operational promotion is still unstable across metric families: motion, denoising, scan structure, and bridge quality can change whether an irreversibility metric is reusable as a comparison lane.
Representative references: Teza & Stella (2020), Cocconi et al. (2022), Hartich & Godec (2024), Martínez et al. (2024), Baiesi et al. (2024), Poudel et al. (2024), Metzen et al. (2024), Chen et al. (2025), Epp et al. (2025).
Major studies and route anchors
- [Nature] Experimental verification of Landauer’s principle linking information and thermodynamics (2012)
- [PNAS] Broken detailed balance and entropy production in the human brain (2021)
- [Communications Biology] The INSIDEOUT framework provides precise signatures of the balance of intrinsic and extrinsic dynamics in brain states (2022)
- [Cerebral Cortex] Temporal irreversibility of neural dynamics as a signature of consciousness (2023)
- [Physical Review E] Entropy production correlates with consciousness levels (2023)
- [Physical Review Letters] Exact coarse graining preserves entropy production out of equilibrium (2020)
- [Physical Review E] Scaling of entropy production under coarse graining in active disordered media (2022)
- [Communications Physics] Effective estimation of entropy production with lacking data (2024)
- [PNAS] Multilevel irreversibility reveals higher-order organization of nonequilibrium interactions in human brain dynamics (2025)
- [Nature Communications] State-space kinetic Ising model reveals task-dependent entropy flow in sparsely active nonequilibrium neuronal dynamics (2025)
- [Nature Neuroscience] BOLD signal changes can oppose oxygen metabolism across the human cortex (2025)
- [Trends in Cognitive Sciences] The Thermodynamics of Mind (2024 review)
U11: Validity of consciousness index approximation
Strict definition: Enables data-driven comparison of under which conditions the indicators such as IIT/PCI/GWT match and under which conditions they deviate.
Research question breakdown
- How to define input/output specifications that can be compared between theories.
- How to deal with computational complexity constraints for PCI and IIT approximate calculations.
- How to reduce the conflicting points of theoretical predictions to a single experimental design.
- How to clarify failure conditions when using awareness indicators in clinical/research settings.
What has some traction now (areas with accumulated literature)
- Comparison targets have been clarified for both theory and demonstration of IIT 4.0, GWT, and PCI systems.
- An adversarial collaboration type theory comparison approach was proposed, and progress was made in clarifying the points of conflict.
- PCI has been shown to have a certain degree of usefulness in clinical and state of consciousness research.
Representative references: Compatibility examination of PCI and GWT, Structured Adversarial Collaboration Process, Adversarial testing of global neural workspace and integrated information theories of consciousness, Integrated Information Theory (IIT) 4.0.
What still needs research (unresolved)
- There is a lack of public benches that compare theories under the same conditions.
- The validity range of the approximation index that avoids the IIT computational complexity problem is not yet determined.
- Practical judgment rules that integrate multiple theories are not yet developed.
Representative references: A study on experimental predictability of IIT, Weak IIT Decomposition and evaluation, PCI reproducibility evaluation (TMS-EEG).
Major previous studies (14 re-examinations)
- [Nature] Adversarial testing of global neuronal workspace and integrated information theories (2025)
- [PLOS ONE] Adversarial collaboration protocol for consciousness theory testing (2023)
- [Neuroscience of Consciousness] Compatibility between PCI and global neuronal workspace theory (2023)
- [Entropy] System Integrated Information (2023)
- [Journal of NeuroEngineering and Rehabilitation] PCI in rTMS treatment responsiveness study (2024)
- [Neuron] Anesthesia and neurobiology of consciousness (2024)
- [OSF] Structured Adversarial Collaboration Process (2024)
- [arXiv] Integrated Information Theory (IIT) 4.0 (2022)
- [OSF] Does IIT make experimental predictions about consciousness? (2025)
- [OSF] Separating weak IIT into IIT-inspired and aspirational-IIT approaches (2023)
- [bioRxiv] Reliability of the perturbational complexity index using TMS-EEG (2020)
- [OpenAlex] An adversarial collaboration to critically evaluate theories of consciousness (2023)
- [Oxford] The global neuronal workspace (2006)
- [OpenAlex] The predictive global neuronal workspace: an active inference model (2020)
U12: Branching identity
Strict definition: Is it possible to define the identity, responsibility, and ownership of rights of multiple entities that occur after duplication/branching in a format consistent with technical evaluation?
Research question breakdown
- Based on what to assign the identifier of the post-branch subject?
- At what point should inheritance rules for responsibilities, rights, and consent be branched?
- How to deal with the discrepancy between the psychological continuity standard and the legal individual standard.
- How to connect technical evaluation (performance) and personality evaluation (attribution).
- If memory editing/resynchronization occurs between branching entities, what are the criteria for reorganizing legal entity IDs?
- When consent is withdrawn, how to technically implement and audit the deprivation of authority to multiple branches.
What has some traction now (areas with accumulated literature)
- Philosophically, issues regarding duplications and fission are being sorted out.
- The conflicting structure of psychological continuity vs. numerical identity is clear.
- Debate on digital personality and data subjectivity is expanding in the legal system.
Representative references: Uploading and Branching Identity, Enhancement, Mind-Uploading, and Personal Identity, Neurotecnologías y neuroderechos, The Right to Personal Identity.
What still needs research (unresolved)
- Operational regulations (auditing/responsibility tracking) directly linked to the technical system are not in place.
- There is a lack of practical design to define evaluation KPIs (welfare, responsibility, ownership) after branching.
- Consistent rules across international jurisdictions have not been finalized.
Representative references: Digital Identity and Legal Personhood, Legal Personhood and Identity of Human Digital Twins, Defining Identity IV: Personhood.
Major previous studies (14 re-examinations)
- [Minds and Machines] Uploading and Branching Identity (2014)
- [Oxford] Enhancement, Mind-Uploading, and Personal Identity (2016)
- [Cambridge] The Right to Personal Identity (2026)
- [Patterns] No legal personhood for AI (DOI: 10.1016/j.patter.2023.100861) (2023)
- [EU Law] EU AI Act (Regulation (EU) 2024/1689) (2024)
- [Council of Europe] Framework Convention on AI (CETS No.225) (2024)
- [Bioethics] Digitizing Dignity: Digital Twins and Human Dignity (2025)
- [AI and Society] What makes a digital human twin more than a simulation? (2025)
- [ISO] ISO/IEC 42001 AI management systems (2023)
- [OECD] OECD AI Principles (in operation)
- [NIST] NIST AI RMF: Generative AI Profile (2024)
- [Science and Innovation] Digital Identity and Legal Personhood (2025)
- [Legal Research and Analysis] Legal Personhood and Identity of Human Digital Twins (2025)
- [Palgrave] Defining Identity IV: Personhood (2014)
Audit lead line (Round 23 added)
- EU AI Act Procedure timeline: EUR-Lex Procedure timeline
- EU procedure number page: Procedure 2021_106
- CoE Convention Details (CETS 225): Treaty Office detail
- CoE recent updates: Treaty Office recent changes
U13: Mimic separation
Strict definition: Is it possible to experimentally separate the evaluation axis that identifies high-performance imitation (verbal/behavioral output) and preservation of internal causal structure?
Research question breakdown
- Can brain-to-text success be broken down into "meaning restoration" and "causal reproduction"?
- How to connect LLM's hallucination/consistency test to neural decoding evaluation.
- How to detect cases where the internal mechanism is different even though the output is the same.
- To what extent can the upper limit of imitation performance be suppressed by causal evaluation?
- When the same decoder is used for visual perception and visual recall, where does the pattern of deterioration in meaning recovery accuracy diverge?
- How to design a control experiment to separately detect prompt induction, data leaks, and shortcut learning.
What has some traction now (areas with accumulated literature)
- Language-facing neural decoding is progressing across several distinct routes: within-subject semantic reconstruction, fixed-segment speech retrieval, known-onset word decoding, prompt-conditioned generation, invasive communication throughput, decoder initialization, fixed-decoder durability, and adaptive rescue.
- The methodology for LLM hallucination detection and self-consistency assessment is being expanded.
- The point that ``output matching alone does not guarantee internal identity'' is widely shared.
Representative references: Semantic reconstruction of continuous language from non-invasive brain recordings, Decoding speech perception from non-invasive brain recordings, Towards decoding individual words from non-invasive brain recordings, Generative language reconstruction from brain recordings, A high-performance speech neuroprosthesis, An accurate and rapidly calibrating speech neuroprosthesis, Transfer learning via distributed brain recordings enables reliable speech decoding, Measuring instability in chronic human intracortical neural recordings towards stable, long-term brain-computer interfaces.
This section becomes too coarse if all language-facing outputs are treated as one `brain-to-text` bucket. Tang et al. (2023) constrain within-subject semantic reconstruction, Défossez et al. (2023) constrain fixed-segment retrieval, d'Ascoli et al. (2025) constrain known-onset word decoding, Ye et al. (2025) constrain prompt-conditioned generation, Willett et al. (2023), Littlejohn et al. (2025), and Wairagkar et al. (2025) constrain communication throughput, Card et al. (2024) and Singh et al. (2025) constrain decoder initialization, Pun et al. (2024) plus the fixed-decoder slice in Wairagkar et al. (2025) constrain fixed-decoder durability, and Karpowicz et al. (2025) plus Wilson et al. (2025) constrain adaptive rescue. These routes do not answer the same question, so this site reads them through the Neural Contribution Card before promoting any claim about mimic separation.
What still needs research (unresolved)
- There is a lack of a unified bench that can simultaneously evaluate imitation and causal preservation.
- Data leak/shortcut learning detection in neural decoding is insufficient, and timing regime / prompt budget / candidate-bank disclosure is still not standardized across language papers.
- Standard procedures for causal evaluation, including intervention experiments, are not yet in place.
Representative references: Zero-knowledge LLM hallucination detection and mitigation, Factuality Hallucination Type Detection via Belief State, Decoding Continuous Character-based Language from Non-invasive Brain Recordings.
Major previous studies (14 re-examinations)
- [Science Advances] Mind captioning: Evolving descriptive text of mental content from human brain activity (2025)
- [Nature Neuroscience] Semantic reconstruction of continuous language from non-invasive brain recordings (2023)
- [Cell Reports] A brain-to-text framework for decoding natural tonal sentences (2024)
- [Journal of Neural Engineering] Brain-to-text decoding with context-aware neural representations and large language models (2025)
- [arXiv] Hallucination Detection with Small Language Models (2025)
- [EMNLP Industry] Zero-knowledge LLM hallucination detection and mitigation (2025)
- [Findings of EMNLP] Factuality hallucination type detection via belief state (2025)
- [AAAI] Representation Learning: A Causal Perspective (2025)
- [AAAI] Learning strategy representation for imitation learning in multi-agent games (2025)
- [Knowledge-Based Systems] Causal representation learning in offline visual reinforcement learning (2025)
- [Nature Machine Intelligence] Shortcut learning in deep neural networks (2020)
- [IEEE EMBC] Decoding visual imagination and perception from EEG via topomap sequences (2025)
- [IEEE EMBC] Decoding visual perception from EEG using explainable graph neural networks (2024)
- [bioRxiv] Decoding continuous character-based language from non-invasive brain recordings (2024)
U14: Possibility of supplementary examination
Strict definition: Is it possible to always maintain open operations that allow third parties to reach the same conclusion using the same data, the same procedures, and the same evaluation contract?
Research question breakdown
- To what extent do you require fixed granularity of data/code/evaluation environment?
- How to operationally separate exploratory research and verification research.
- How to audit leaks, overfitting, and reporting bias in leaderboards.
- How to integrate the Model Card / Dataset Card into the evaluation contract.
- How to publish failed reproduction cases as a negative example registry and operate the retry cycle.
- If container fixation (OS, dependent libraries, random number seeds) is made mandatory, how much increase in reproduction cost can be tolerated?
What has some traction now (areas with accumulated literature)
- In response to the reproducibility crisis, preregistration and open science practices are expanding.
- Practical frame of Model Card / Dataset Card is available.
- Extensive knowledge regarding pitfalls (leakage, data duplication) in bench operations.
Representative references: Preregistration template for cognitive models, Preregistration and increased transparency will benefit science, Methodological failures in medical imaging ML and recommendations.
What still needs research (unresolved)
- Common audit rules across neuroscience and machine learning are insufficient.
- Culture and implementation of continuous publication of failure cases is limited.
- There is a lack of a mechanism to track evaluation deterioration over long-term operations.
Representative references: The Reproducibility Crisis, Open science interventions to improve reproducibility and replicability of research, Barriers and solutions for early career researchers in tackling reproducibility, PreregRS guides preregistration for research syntheses.
Major previous studies (16 re-examinations)
- [Royal Society Open Science] Preregistration template for the application of cognitive models (2021)
- [OSF] Preregistration and increased transparency will benefit science (2017)
- [npj Digital Medicine] Methodological failures in medical imaging ML and recommendations (2022)
- [Book Chapter] The Reproducibility Crisis (2019)
- [Royal Society Open Science] Open science interventions to improve reproducibility and replicability (2024)
- [OSF] Barriers and solutions for early career researchers in reproducibility (2018)
- [PreregRS] PreregRS guides preregistration for research syntheses (2022)
- [Journal of Neuroscience Methods] Methodical advances in reproducibility research (2023)
- [Scientific Data] Motion-BIDS extension for reproducible motion data (2024)
- [Scientific Data] A comparison of neuroelectrophysiology databases (2023)
- [Epilepsia Open] EEG datasets for seizure detection and prediction: a review (2023)
- [eLife] Enhancing precision in human neuroscience (2023)
- [JAMA] TARGET statement for transparent reporting (2025)
- [BIDS] BIDS Specification 1.10.1 (2025 updated version)
- [arXiv] ezBIDS for curation and validation workflow (2023)
- [Zenodo] BEP036 draft metadata extension (2025)
U15: Institutional integration
Strict definition: Is it possible to link technical evaluation KPIs and legal/ethical KPIs and define suspension criteria and disclosure criteria at the operational level?
Research question breakdown
- Which legal concept should be used to handle the sensitivity of neural data (personal information, biological information, personality information)?
- How to map neurorights to technical audit items.
- How to define the minimum common operation across jurisdictional differences (EU/US/JP, etc.).
- How to governance the suspension conditions and update conditions according to technological progress.
What has some traction now (areas with accumulated literature)
- Policy discussions and bill proposals related to neurorights/neurodata protection expand.
- The risk areas of BCI privacy and security have become relatively clear.
- Increased attempts to connect AI governance frameworks to neurotechnology.
Representative references: Privacy and Security in Brain-Computer Interfaces, Privacy and Ethics in Brain-Computer Interface Research, Ethical Governance Strategies for the Responsible Innovation of Neurotechnologies, Ethics and Governance of Neurotechnology in Africa.
What still needs research (unresolved)
- There is a lack of implementation standards that link technical indicators and legal suspension criteria.
- Internationally interoperable audit templates are not yet in place.
- Operation rules are divided at the boundary between research and commercial use.
Representative references: Responsible AI Healthcare and Neurotechnology Governance, Social values and privacy law and policy, On Neurorights.
Major previous studies (16 re-examinations)
- [EU Law] EU AI Act (Regulation (EU) 2024/1689) (2024)
- [Lancet Neurology] Neurorights in neurology (2025)
- [Journal of Human Rights Practice] Establishing Neurorights: New Rights versus Derived Rights (2024)
- [NIST] NIST AI RMF: Generative AI Profile (2024)
- [OECD] OECD AI Principles (in operation)
- [Council of Europe] Framework Convention on AI (CETS No.225) (2024)
- [ISO] ISO/IEC 42001 AI management systems (2023)
- [AISC] Privacy and Security in Brain-Computer Interfaces (2021)
- [Handbook Chapter] Privacy and Ethics in Brain-Computer Interface Research (2018)
- [Bioethics] Ethical Governance Strategies for Responsible Neurotechnology (2025)
- [JMIR Neurotechnology] Ethics and Governance of Neurotechnology in Africa: Lessons from AI (2024)
- [Cambridge Handbook] Responsible AI Healthcare and Neurotechnology Governance (2022)
- [Research Handbook] Social values and privacy law and policy (2022)
- [Frontiers] On Neurorights (2021)
- [arXiv] Honest Computing: demonstrable data lineage and provenance (2024)
- [OpenAlex] Equal access to mental augmentation (2023)
Audit lead line (Round 23 added)
- EU AI Act Procedure timeline: EUR-Lex Procedure timeline
- NIST AI RMF Development History: NIST AI RMF Development
- OECD legal text: OECD-LEGAL-0449
- OECD 2024 update release: OECD press release (2024 update)